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Information for unigene UN20849

FASTA Sequence
Unigene ID: UN20849Length: 765  SNP
GGCTCACAACGATCGGATCAAAGAATCACATCCATCTCTTTTGACAATTGAAACTAGTGAAAAATGGGGATAATCAGAAAGAAACA
CGATAAAAAATCCCGAAGGCCGTCGTTTAAGAGTGTTTTAACCTCAGTACTAGCTACACAAGCCGCAATATTCCTCTTATTGCTCG
CCGGTGTATCCCTCGCTGGCACAGCCGTCGCATTTATTGCCACCATGCCGCTATTCATAGTATTCAGTCCGGTTCTCGTACCAGCG
GGTATTGCCACTGGTTTACTGGCTACGGGTTTAGCAGCCACCGGTAGCACCGGTGCAATGGCTGTCTCCCTCATCCTGTGGCTCTT
CAAGCGAGCAACGGGCAAGGAGCCGCCAAAAATCATGACAAAAATCTTGAGAAAGGTGTTTCCGGGTGGAGGTACTAGTCATGCAG
CTAAACTGGCAGCAAAACCAGAAGCCGAGACAGCAGCCTCACCAGCGGCCGCACCAGCAGCCTCACCAGCAGCCGCACCGAGTACA
TGAAAAGAACCGGTGGGTATAAGCAAAGGATGATAGATAAACAATCCAACTTTTAAAAATAAATAATAATTATTACGTGGGGATGG
AAGTTAAATTTTCAGATATTATTATACTAACGGATATCGTGGTACAAAATAGTAACAAATGTAAGCATTTTTATTGTATAACATTT
TAAGAACGAAGCGATGTATCGTTGATGTTAACCCTATTCAAGTTCAACAATGTTATTCTGATTCAAGTTCTTGTTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAB04616 anther-specific protein [Brassica rapa subsp. pekinensis]5825e-058
CAA57545 oleosin [Brassica napus]5063e-049
Q00650 RecName: Full=Oleosin-B1; AltName: Full=Microspore-specific protein I3; AltName: Full=Oleosin-B5; Contains: RecName: Full=Pollen coat protein B1; AltName: Full=Pollen coat protein B55002e-048
CAA57544 oleosin [Brassica napus]4965e-048
AAR15435 pollen coat oleosin-glycine rich protein [Sisymbrium irio]4241e-039

Swiss-Prot top hits (Blast detail)Scoree value
Q00650 Oleosin-B15007e-050
P29526 Oleosin-B2 (Fragment)2005e-015
P13436 Oleosin Zm-I1996e-015
Q42980 Oleosin 16 kDa1971e-014
Q96543 Oleosin 16 kDa1881e-013

TrEMBL top hits (Blast detail)Scoree value
Q39273 Anther-specific protein5823e-058
Q6V5I3 Pollen coat oleosin-glycine rich protein4247e-040
Q43399 Oleosin-like protein (Fragment)3736e-034
A0T2P7 Oleosin-like protein3476e-031
Q6V5D5 Pollen coat oleosin-glycine rich protein3395e-030

Arabidopsis top hits (Blast detail)Scoree value
AT5G07560.1 GRP20 (GLYCINE-RICH PROTEIN 20); lipid binding / nutrient reservoir3214e-030
AT5G07571.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: GRP20 (GLYCINE-RICH PROTEIN 20); lipid binding / nutrient reservoir (TAIR:AT5G07560.1); Has 374 Blast hits to 374 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 374; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2499e-022
AT5G07550.1 GRP19 (GLYCINE-RICH PROTEIN 19); lipid binding2247e-019
AT5G07530.1 GRP17 (GLYCINE RICH PROTEIN 17); lipid binding2085e-017
AT5G07530.2 GRP17 (GLYCINE RICH PROTEIN 17); lipid binding2085e-017

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
611  32%
 
104  12%
 
125  15%
 
92  6%
 
84  12%
 
74  12%
 
112  6%
 
182  6%

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