RadishBase

| | | |

Information for unigene UN21160

FASTA Sequence

Unigene ID: UN21160	Length: 2046	SSR
TCGTTTGTAACCCATCCACTTTCATATGATCTCTAATCTGTTTTGGAGTAGCAACATGTGATCCACCGAGCTGCTGAAGCGCGTGA AGGAACCGTCGGTGTAACTCCGGCGACCAACACCGCCTTTGCTTTCTACGCGTTTGCGATTGCGTTTGCGATTGTTGCTGATGTAT ATGTTCCTCTCCCCCTTTACCAACAACACCACATGTCTCCGTGGTGGAGCTAGTGGTCGTCGCCGGCGCCGGCGCCGAAGCAACCA CTTTCACCGCCGGAGCTGAATCAACCGCTTTCACCGCCGCCTGCTGCGGTTCAGCACTCTCGGAGAAAACGCGTTTTTTCTCTCTC TGAAACGGCTGGAACCCACCGCAGTTGCTGTTGTTTGGTTTCACCTCAACCACTTTCGCCTTCTTACCTACTACACGTTCCGGATT AGACACCTCATTCGTGGTGTTTGTGTTCGTGTCCGGGGACGGATTCCATAGCTGAACAGATCTGAGCCAGTCTGATCTCTTAACGT TCTCTTCAGGTGGAGTTGGAGATTCGTGTTCGCCGTTTTCCTCGGTCTTCTTGGTCGGGATAAACTCCTCTAAGACCGGACCACCG GAAACACTAGTCGTCTGCTCCGAACACTGCTCTGAGGTCGTTGAAGTACTCGACAGCTCCTTCCGACACGCCTCTATAGCTTGCGT GACAAGCTCTAAACATAAAGGAAGCTCTCGTTGGAAGACTTGAATCTTCTTTTGTTCTTCTTCAAGCGCTTCAACGTACTCATGAC ATCTCTGCATTTTCTGGGCGTCCATTTTCTGAAATTGTTATAATCAAAATCTGATATAATAGTAAGGAAGGAAGCAACTGGTTTTT AGATCTATAGAGGAGTGGGTGTAGTTTGGTTCGGAAAGAATATTGGATCTAAATGGAATCAGATAGGAATAAACGTCGAGAGATAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTTGTATATAAACAAGAAGCATCTCTTGATTACTAGACACTGAA AGAAGTCAAAAATTATTTTTGTTTTTTGTTTGTTTGTGAAGTAGTAGGGTTTTGGTCTGATTTGATTTGATCTCTCCTGAGTTTTT GTCGGTTGGGTTCTTTGTTTTATTTCTACAGTATTAGATCGACAAAAGAAAAAACAAAAAAAACAAAAAGGAGAGTTGTGGAGTGA GATCACTGCAGAAAGAAAAAAAATGGGATCTTCTTCAGGACAAAGTGGATATGATCTGTCTTTCAAGATCTTGTTGATTGGAGATT CTGGTGTTGGTAAAAGCAGCTTGCTTCTCAGTTTCATTTCCAGCTCTGTCCATGATCTTGCTCCCACCATAGGTGTTGATTTTAAG ATCAAACAGCTGAAAGTAAGAGGAAAAAGGGTAAAGCTTACAATCTGGGACACAGCTGGACAAGAAAAGTTCAGGACGTTGACAAG TTCTTATTTCAGAGGCTCCCAAGGGATCATTCTCGTTTATGATGTGACGAAAAGAGAGACGTTTCTGAACTTGGCAGATGTTTGGG CCAAAGAGATTGAGCTTTACTCCACTAACCATGACTGCATTAAGATGCTCGTTGGCAACAAAGTCGACAGAGAATCAGAGAGGAAG GTAAGCCGAGAAGAAGGAACGGCTCTAGCCAAAAAACTCAAGTTTCTGTTTCATGAATGTTGCGCAAGAACCAGAGAAAACGTGAA GCAATGCTTTGAAGAGCTTGCTCTCAAGATAATGGATGTACCTAGTCTTTTGCAAGAAGGATCAAGCTCTCTGAAGAGAAAACCGG ATTTCAGAACTCATCAGAGCCGGTGCTGCTCGTGAGCTGTGTTTGATCATTGAAACCCGCCTAGGTTCTTTTGTGTGTAAATTTAT ATAAAGACGAAGCTTGGCTTCTCTGTAAATCTCCTTATCAGTTCCTTAGATTGTTCTTCTTTTTTTTTGCCTCGACTGAGATTGTG TAATAATAAGTTAATAACCTCACTACACAGAAGAAAAGGAAAGCAAGACCAGCGTGTATCTTGTGTTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_187602 RAB GTPase-like protein C2B [Arabidopsis thaliana]	959	4e-101
XP_002884760 hypothetical protein ARALYDRAFT_478315 [Arabidopsis lyrata subsp. lyrata]	957	7e-101
NP_568121 RAB GTPase-C2A [Arabidopsis thaliana]	844	9e-088
XP_002267276 PREDICTED: hypothetical protein [Vitis vinifera]	788	3e-081
XP_002326383 predicted protein [Populus trichocarpa]	773	2e-079

Swiss-Prot top hits (Blast detail)	Score	e value
P36862 GTP-binding protein yptV3	485	2e-047
Q6DHC1 Ras-related protein Rab-18-B	478	1e-046
Q5ZLG1 Ras-related protein Rab-18	476	2e-046
Q5EB77 Ras-related protein Rab-18	475	2e-046
Q05976 Ras-related protein Rab-18A	469	1e-045

TrEMBL top hits (Blast detail)	Score	e value
Q9SF92 At3g09910	959	3e-101
O49841 AtRab GTP-binding protein	844	6e-088
B9MTI0 Predicted protein	773	1e-079
B9S0D3 Putative uncharacterized protein	771	2e-079
B9IFU0 Predicted protein	757	7e-078

Arabidopsis top hits (Blast detail)	Score	e value
AT3G09910.1 ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B); ATP binding / GTP binding / transcription factor binding	959	1e-103
AT5G03530.1 RABC2A (RAB GTPASE HOMOLOG C2A); GTP binding / GTP-dependent protein binding / myosin XI tail binding	845	2e-090
AT1G43890.1 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding	700	2e-073
AT1G43890.2 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding	700	2e-073
AT1G43890.3 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding	700	2e-073

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


20	3			21%


18	2			14%


21	3			21%


19	3			21%


9	2			14%


11	1			7%

Unigene Members	Member information