RadishBase

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Information for unigene UN21411

FASTA Sequence

Unigene ID: UN21411	Length: 832	SSR	SNP
GGACCCTAGTTTCCACTGCTGAACTGCGCCGCGACATATATATCTTTAATCCTCTCTAGCAGGGCTGTTGTAGTGACAGTTTCTAT CGGAGAAGATGAAGTTCAACGTCGCGAATCCGACTACTGGTTGCCAGAAGAAGCTTGAGATCGATGACGACCAGAAGCTCCGTGCT TTTTACGACAAGAGGCTCTCACAGGAAGTTAGCGGAGATGCTTTGGGCGAGGTGAATTTTCTACCTACTACTCGTTTGGAGAAGCT AAGGCGATTGGAGAAGTTACAGAGTGTTGTATCAGCCATCTCTTCTCACGGCTTACTTTCTTCTTCGTCAGCTTCAGATAATGAAT CTTCTTCTTCTTCTCGATTCCTTTCGGAGCTCGTACTTTTCCTGCTACAACCATCCGGCGACCTTGATATTGAATCGAAACTCGTT TTGATCTCTGATTTCATACCTAAAGTATCTGGAACTTTCCTCGATGAGATATCTAGGTCAGTTCAGCGAGAGGATGAACCTAAACC ACTAATCACCAGTTCAGCAGAGGTCAAAAGAGTTGTGTGAAGAGGAGTTTCATGGACAGGAGGGAGTGAACTCCTCATGGTGGTGG TGATGATGATGCCAGTTTTTTTGTGTGTGTTGTTTAACAATTGAGCGAGCGAAAGAGACAAGAAGGTTGAGAAGATTCGGAAGAGT AAGAGAAAACTTGTTTTTTATTGTATTTTTTTTGTTTCTTATGTAACCGACTTTTTTTTTCTCTTTTTGTTTTTTCTTTAATATTT TGGATATAATATTTAACTCTTTTAAATTTAAATTTATCTCATAAGAAATAATCGCAGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAZ67614 80A08_29 [Brassica rapa subsp. pekinensis]	360	3e-032
AAZ66937 117M18_18 [Brassica rapa]	223	2e-016
AAP46142 ribosomal protein S6 [Brassica napus]	223	2e-016
NP_194898 40S ribosomal protein S6-1 [Arabidopsis thaliana]	221	4e-016
AAB88298 ribosomal protein S6 [Arabidopsis thaliana]	221	4e-016

Swiss-Prot top hits (Blast detail)	Score	e value
O48549 40S ribosomal protein S6-1	221	2e-017
Q9M3V8 40S ribosomal protein S6	220	3e-017
P51430 40S ribosomal protein S6-2	219	3e-017
Q9BMX5 40S ribosomal protein S6	153	1e-009
Q5E995 40S ribosomal protein S6	153	1e-009

TrEMBL top hits (Blast detail)	Score	e value
Q4ABN8 80A08_29	360	2e-032
Q4AC02 117M18_18	223	2e-016
Q7Y0H9 Ribosomal protein S6	223	2e-016
A2XHI9 Putative uncharacterized protein	220	4e-016
Q3HVK4 Ribosomal protein S6-like protein	220	4e-016

Arabidopsis top hits (Blast detail)	Score	e value
AT5G10320.1 unknown protein	287	4e-026
AT5G10320.2 unknown protein	278	4e-025
AT5G10320.3 unknown protein	278	4e-025
AT4G31700.1 RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome	221	2e-018
AT5G10360.1 EMB3010 (embryo defective 3010); structural constituent of ribosome	219	3e-018

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	2			17%


9	3			25%


20	2			17%


6	4			33%


8	1			8%

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