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Information for unigene UN21418
| FASTA Sequence |
| Unigene ID: UN21418 | Length: 912 |
SSR | SNP | AGAAATCGATCCAGAGAGAGAGAGAGAGAGAGCGAAAATGATTCGAACGGCTTTGTTGGTCGTTGCTTTACTCATCGGAACAAGCG
TACATGCGCAGCAAGTGCCCCCGCCGAGACGCGATGGGTTCGTGTATCCACCGGGTAGGAAAATCGAACCGGAAACGATACTTATC
GAAGCGTATTTTGACCCGGTTTGCCCCGATTGCGGAGACGCTTGGGAACCGCTAAAGCTAGCGGTTGATCACTACGGATCTCGCGT
CGCTCTTGTTCTTCACCTCATCCCTTTGCCGTTCCATGACAATGCGTTTGTAGTGTCTCGGGCCTTGCACATTGTGAATACGTTAG
ATTCCAATGCCACGTTCAGTTTGCTGGAAGGGATCTTCAAGCACCAGGCATTGTTCTACAACTCGCAAACACAATTCATGCCAAGA
CCTGCAGTTGTGGACAAATTAGTTAAACTCGGGACAGTTACATTAGGTAGCTCATTTCACTATCCCCTGAAATCTGGCTTCCGCAA
CTCACAGTCTGATCTTGCTACTAGGGTTTCCTTCAAGTATAGCGTTTCAAGAGGAGTTTCCGCAACACCAACCTTCTATGTGAATG
GGTTCGAGCTGCCCGATGCTGGTTCTCCCATTGATTTTGAAGGATGGAAAAACACCATTGATCCTCTGGTTAACCCACGAGAAGCA
AAGATAAAGGACACCTTCCTTTCATTCCTCACCCAACCATCTTATTAGTCTTGCTTTTTATGCTGCCTCAAACTCACACTAATGTA
CTAGACAAATTTAGTTCTCCAAAATCTCTGTAGAGAACTAATCATCATTAATAACCCAGAAGCATAAAAACATGCATGCTCATAAT
TTTCAGATACATGCTTAATTTTCTAGCATTTTAACATTTGATCAAAACTTGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_683315 TRX domain-containing protein [Arabidopsis thaliana] | 1012 | 9e-108 |
| XP_002893094 hypothetical protein ARALYDRAFT_312946 [Arabidopsis lyrata subsp. lyrata] | 945 | 6e-100 |
| AAF79893 Contains similarity to pigpen protein from Mus musculus gb|AF224264 and contains protein of unknown function DUF78 PF|01918 domain. ESTs gb|N38077, gb|BE037702, gb|AV442191, gb|AV441368, gb|Z17998, gb|AV527266, gb|AV520794, gb|AI997847, gb|AV543000 come from this gene [Arabidopsis thaliana] | 927 | 7e-098 |
| NP_177728 Thioredoxin superfamily protein [Arabidopsis thaliana] | 797 | 8e-083 |
| XP_002889053 hypothetical protein ARALYDRAFT_895477 [Arabidopsis lyrata subsp. lyrata] | 770 | 1e-079 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8W456 Putative uncharacterized protein At1g20220 | 1012 | 6e-108 |
| Q9LNU5 T20H2.2 protein | 927 | 5e-098 |
| A0JQ12 At1g76020 | 797 | 6e-083 |
| Q9LQR6 T4O12.23 | 719 | 6e-074 |
| B9R8E8 Putative uncharacterized protein | 638 | 2e-064 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G20225.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76020.1); Has 156 Blast hits to 152 proteins in 51 species: Archae - 0; Bacteria - 81; Metazoa - 14; Fungi - 6; Plants - 28; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | 1013 | 3e-110 |
| AT1G76020.1 INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20225.1); Has 118 Blast hits to 116 proteins in 37 species: Archae - 0; Bacteria - 51; Metazoa - 12; Fungi - 4; Plants - 28; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | 802 | 9e-086 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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