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Information for unigene UN21557
| FASTA Sequence |
| Unigene ID: UN21557 | Length: 1780 |
| SNP | GGAGAACCAAACAACAAGAAGAAGGTTTTGATTTTGGGAGGAGGACCAAACCGTATTGGCCAAGGGATTGAATTTGATTACTGTTG
TTGCCACACATCTTTTGCTTTACAGGATGCTGGATTTGAGACTATCATGTTGAACTCAAATCCTGAGACGGTATCCACTGATTACG
ATACAAGCGACAGGCTCTACTTTGAACCTCTCACAATCGAGGACGTTCTGAATGTCATTGATCTTGAGAAACCTGATGGCATAATC
GTGCAGTTTGGTGGTCAGACTCCTCTGAAGCTTGCTCTCCCAATCAAAAACTATTTGGACAAGCACAAGCCCATGAGCTTGAGTGG
TGCGGGGCCTGTTCGCATCTGGGGTACGTCACCTGACTCCATTGACGCTGCTGAAGACAGAGAGAGGTTCAATGCGATTCTCAACG
AGCTGAAAATTGAGCAGCCCAAGGGAGGCATTGCAAAGAGCGACGCTGATGCATTAGCCATAGCGAAGGAGATAGGCTACCCGGTG
GTTGTGAGACCTTCTTATGTTCTAGGTGGAAGAGCAATGGAGATTGTTTATGATGACAGTAAACTTGTTACCTATTTGGAGACTGC
TGTTGAAGTCGATCCAGAGAGACCTGTTTTGGTAGATAGGTATCTCTCTGATGCCATTGAGATTGATGTGGATACTCTCACTGATT
CATATGGAAATGTGGTGATTGGTGGAATAATGGAGCATATCGAGCAAGCAGGTGTGCACTCTGGTGACTCGGCTTGTATGCTTCCA
ACGCAGACCATCCCATCTTCTTGTTTGGAAAAGATCAGAACATGGACCACCAAGTTGGCGAAGAAGCTAAATGTTTGTGGGCTGAT
GAACTGTCAGTACGCAATCACATCATCTGGTGATGTTTACTTGCTGGAAGCAAATCCACGAGCTTCACGTACTGTCCCTTTTGTCT
CAAAGGCCATTGGACACCCTCTTGCCAAGTATGCAGCTCTGGTCATGTCTGGAAAATCTCTCAAAGATCTGAATTTCGAAGAAGAA
GTTATCCCTAAACACATCTCTGTGAAAGAAGCTGTTTTCCCATTTGAGAAGTTCCAAGGTTGTGATGTGATACTCGGGCCAGAGAT
GAGAAGCACAGGGGAAGTGATGAGCATCAGTTCCGAGTTCCCAAGTGCCTTTGCAATGGCTCAGATTGCTGCAGGTCAAAAGCTAC
CTTTAAATGGTACTGTCTTCCTCAGCTTAAACGATATGACCAAACCGCACCTGGAGAAAATTGCAGTGTCCTTCCTAGACCTTGGG
TTCAAGATCGTTGCCACATCGGGAACAGCGCATTTCCTGGAACTGAAAGGCATTCCAGTGGAGAGAGTGTTGAAGTTGCATGAAGG
AAGACCACATGCTGCTGATATGGTGGCTAATGGTCAGATTCATCTGATGTTGATCACAAGCTCAGGTGATGCTCTTGATCAGAAGG
ATGGGAGGCAGCTCAGACAGATGGCTCTAGCCTACAAGGTCCCGGTTATCACCACTGTTGCTGGAGCATTGGCCACGGCTGAGGGA
ATCAAGAGCTTGAAGTCAAGTGCTATTAAAATGACTGCTCTTCAGGACTTCTTTGAGATTAAGAATGCATCTTCTTTACTCGTCTG
AGTCAAGTTTTTATTTCTGTGTGTTTGTTCGTTTGTGTGGAACCCTTTATGACTTCAATGTTAGACGGATTTTGTTTTCTTATAAG
CATTTCTATGAATAATCTTCACAGGTTGATTTCTAAACGGCAACGTGAGTGTCATTTGTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_564338 carbamoyl phosphate synthetase B [Arabidopsis thaliana] | 2677 | 2e-300 |
| BAH20418 AT1G29900 [Arabidopsis thaliana] | 2670 | 1e-299 |
| XP_002890837 hypothetical protein ARALYDRAFT_473200 [Arabidopsis lyrata subsp. lyrata] | 2663 | 9e-299 |
| XP_002282042 PREDICTED: hypothetical protein [Vitis vinifera] | 2361 | 9e-264 |
| CAN69740 hypothetical protein VITISV_017584 [Vitis vinifera] | 2359 | 2e-263 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q55756 Carbamoyl-phosphate synthase large chain | 1667 | 1e-184 |
| Q8YQL2 Carbamoyl-phosphate synthase large chain | 1285 | 2e-140 |
| Q8TUT7 Carbamoyl-phosphate synthase large chain, C-terminal section | 1260 | 2e-137 |
| C1A4I5 Carbamoyl-phosphate synthase large chain | 1084 | 5e-117 |
| Q8XZ83 Carbamoyl-phosphate synthase large chain | 1036 | 2e-111 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q42601 At1g29900/F1N18_6 | 2677 | 1e-300 |
| B9DI51 AT1G29900 protein (Fragment) | 2670 | 9e-300 |
| A5B6E2 Putative uncharacterized protein | 2359 | 1e-263 |
| Q8L6J9 Putative carbamoyl phosphate synthase large subunit | 2313 | 2e-258 |
| B9SK20 ATP binding protein, putative | 2299 | 1e-256 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G29900.1 CARB (CARBAMOYL PHOSPHATE SYNTHETASE B); ATP binding / carbamoyl-phosphate synthase/ catalytic | 2678 | 6e-303 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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