RadishBase

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Information for unigene UN21581

FASTA Sequence

Unigene ID: UN21581	Length: 1798		SNP
GGACTACCAAAACCTCAAAATTTAGCTTTGGGATCATCAAAGCTTCTTCATCACCATGGATCCTTACAAGTATCGTCCATCGAGCG CGTACAACTCTCCCTTCTACACCACAAACGGTGGTGCTCCAGTCTCGAACAACATTTCTTCCCTCACCATCGGAGAAAGAGGTCCG GTTCTTCTCGAGGACTACCATCTGATCGAGAAGGTTGCCAACTTCACCAGGGAGAGGATTCCTGAGAGAGTGGTTCATGCTAGAGG AATCAGTGCTAAGGGTTTCTTTGAGGTCACGCATGACATTTCAAACCTCACTTGTGCTGACTTCCTCAGAGCCCCCGGTGTTCAAA CTCCGGTCATTGTCCGTTTCTCCACAGTGGTTCACGAACGTGCCAGCCCTGAGACCATGAGGGATATTCGCGGGTTCGCCGTCAAG TTTTACACCAGAGAGGGAAACTTTGATCTTGTTGGGAACAACACTCCGGTGTTCTTCATCAGAGACGGGATTCAGTTCCCGGATGT TGTCCACGCGCTGAAACCGAACCCCAAGACAAACATCCAAGAGTACTGGAGGATACTGGACTACATGTCCCACTTACCAGAGAGCT TGCTCACATGGTGCTGGATGTTTGATGATGTTGGTATCCCACAAGACTACAGGCACATGGAAGGTTTCGGTGTCCACACATACACT CTAGTTTCCAAATCTGGAAAAGTTCTCTTTGTGAAGTTCCACTGGAAACCTACTTGTGGGATCAAGAATCTAACTGATGAAGAGGC CAAAGTGGTTGGAGGAGCCAATCACAGCCACGCAACTAAGGATCTCCATGATGCTATTGCATCTGGTAACTATCCTGAGTGGAAGC TTTTCATCCAGACAATGGATCCTGCGGATGAGGATAAGTTTGATTTCGACCCGCTTGATGTGACCAAGATCTGGCCTGAGGATATC TTGCCTTTGCAACCAGTTGGTCGCTTGGTTTTGAACAGGACCATTGATAACTTCTTCAATGAAACTGAGCAGCTTGCTTTCAACCC TGGTCTTGTGGTTCCTGGGATCTACTACTCTGATGATAAGCTTCTCCAGTGTAGGATCTTTGCTTATGGTGACACTCAGAGACATC GTCTTGGGCCTAATTATCTGCAGCTACCGGTTAATGCTCCAAAATGTGCTCACCACAACAATCACCATGAAGGTTTTATGAACTTC ATGCATAGAGATGAGGAGATCAACTACTACCCCTCAAAGTTTGATCCTGTCCGCTGTGCTGAGAAAGTTCCTATCCCTACCAAGTC TTACACTGGAATCCGAACAAAGTGCATCATCAAGAAGGAGAACAACTTCAAGCAACCTGGAGATAGATACAGATCATGGGCACCAG ACAGGCAAGACCGGTTTGTTAAGAGATGGGTAGAGATTCTGTCAGAGCCACGTCTCACGCATGAGATCCGTAGCATCTGGATCTCT TACTGGTCTCAGGCTGATCGATCTTTGGGACAGAAGCTTGCAAGCCGTCTCAACGTTAGGCCAAGCATGTAATCTTCATATTTGCT TATTGCCCGGAAAGTACAATCGTGATCTCTTATCATCTGTTGGTCGTTATATTCCTCAAAAATATGATTTTCTTGGGTTGTTTATA TCGTCTATGTATAATAGTGATGCATGTAATCCTCTAAAACGATGTTTCCTTCATGTTTTACTGTCACTCTCTTTGTGATTTCTTAA GAATAAATCAATGTTTCTTGGAGCAGTATATATAGCTTATTAAAGTGGAGTATATAAACATGTTCATTTTAGTTTGAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAB53101 catalase [Brassica napus]	2669	2e-299
AAD30292 catalase 3 [Raphanus sativus]	2652	2e-297
AAD30291 catalase 2 [Raphanus sativus]	2648	5e-297
NP_564120 catalase 3 [Arabidopsis thaliana]	2647	6e-297
AAM65021 unknown [Arabidopsis thaliana]	2643	2e-296

Swiss-Prot top hits (Blast detail)	Score	e value
Q42547 Catalase-3	2647	3e-298
P17598 Catalase isozyme 1	2186	8e-245
O48561 Catalase-4	2184	1e-244
P25819 Catalase-2	2183	2e-244
P49317 Catalase isozyme 3	2180	4e-244

TrEMBL top hits (Blast detail)	Score	e value
Q96350 Catalase	2669	1e-299
Q9XFC8 Catalase 3	2652	1e-297
Q9XFC7 Catalase 2	2648	3e-297
Q2V4M3 AT1G20620 protein	2564	2e-287
C0Z2I6 AT1G20620 protein	2554	3e-286

Arabidopsis top hits (Blast detail)	Score	e value
AT1G20620.1 CAT3 (CATALASE 3); catalase	2648	2e-299
AT1G20620.5 CAT3 (CATALASE 3); catalase	2596	2e-293
AT1G20620.2 CAT3 (CATALASE 3); catalase	2270	1e-255
AT4G35090.1 CAT2 (CATALASE 2); catalase	2184	1e-245
AT1G20630.1 CAT1 (CATALASE 1); catalase	2155	3e-242

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	4			10%


21	6			15%


20	2			5%


19	13			33%


15	2			5%


6	4			10%


9	3			8%


8	1			3%


10	4			10%

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