Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN21662

FASTA Sequence
Unigene ID: UN21662Length: 838 SSRSNP
GGATTATTTATTTATTTCAAAAATTTCATAATATTCACTCTCTCTCTCTTGTCTCTCTCATATCTTCGTGGTACGCCATAGCTCGT
CTTCAAAGTCGTCTTTTCTTTTCTTTTCTTGTTTCAATCAGATCTCTTGGTCACTTGTTAACCAAAAGAATCATGGAACTCAACTT
CCTATCTAGAGCTCTTACATCATTCATCCTTGTACTCACAGTACTTGCATCCTTCTCATCTTCAAGTTTCATCTCTGATGGTGTGT
TCGAACCGCAGAATTTGGCTATTGGAAGAAACCTACTTCAGACCAAGAAAGCATGTCCTGTGAACTTTGAGTTTATGAACTACACA
ATCATAACAAGCCAATGCAAAGGTCCCAAATTCCCACCCAAGGAATGCTGTGGCGCTTTCAAGGACTTTGCATGTCCTTACACTGA
TGAGATCAACGACTTGAGTAATGAGTGTGCTACCACTATGTTCAGTTACATCAATCTCTATGGAAAATACCCACCGGGACTTTTCG
CAAACCAGTGCCAAGAAGGTAAAGAAGGTCTCGCCTGCCCCGCTCTGTCTCCTACCGCAGCAAGCGACACAAACGCAGCCACCACA
GCTGCTTCTCGTCTTTGGCTGGCCGTCTTCACAGCTTTCTTGGTGTTTGTTAACTTGCTCTAAGTCCCATGTCTGTAATATAGCAA
CTTGAGGAAGCTGGATCTCTGTATATCCACGATTTGTTTTACTTGTACCATCTCATTCTTTTGATTTTTGGAGCTTCAAAAAATTC
TAAATTGATAATATGTATGACTTTTGTGCGTCTCATTCACTCTATAAATCTCGACCAAAGAAGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002864439 hypothetical protein ARALYDRAFT_495704 [Arabidopsis lyrata subsp. lyrata]6865e-070
NP_200428 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 [Arabidopsis thaliana]6849e-070
ACU16228 unknown [Glycine max]5153e-050
XP_002272406 PREDICTED: hypothetical protein [Vitis vinifera]5082e-049
XP_002299077 predicted protein [Populus trichocarpa]5055e-049

Swiss-Prot top hits (Blast detail)Scoree value
B3GS44 GPI-anchored protein LORELEI4505e-044

TrEMBL top hits (Blast detail)Scoree value
Q9FKT1 Putative uncharacterized protein At5g561706846e-070
C6T3J0 Putative uncharacterized protein5152e-050
B9GHJ9 Predicted protein5053e-049
B9T0K5 Putative uncharacterized protein5001e-048
Q9ZWN0 GPI-anchored protein4946e-048

Arabidopsis top hits (Blast detail)Scoree value
AT5G56170.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LRE (LORELEI) (TAIR:AT4G26466.1); Has 71 Blast hits to 71 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).6872e-072
AT4G26466.1 LRE (LORELEI)4505e-045
AT2G20700.1 unknown protein3932e-038
AT4G28280.1 unknown protein3573e-034

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
93  16%
 
69  47%
 
111  5%
 
103  16%
 
73  16%

Unigene MembersMember information