RadishBase

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Information for unigene UN21671

FASTA Sequence

Unigene ID: UN21671	Length: 686		SNP
AACTGAGTGAAATTATAAGATTAAAAAGAAATTGAATTTAGAACATAGTATGCTCTGTTTATTGTCGGAACAAAATTTAAACCCCC CAGATAAACAAAAAAAAAACTATCAACACATTCATTTACATAAAAACCAGATCTAACACTTTTCTCAGATTCCGACATCGGAAACA AGATAAAGATAGAAACAGAGCAAAACTTTGCATGTTTTTTTTTTCTTTTTTCTTAAAGAGGGTAATATATAAAGAAAAAACTATCT GCTTATGTAATAAAAACACAACTAGGCCACCACGAGAGTTCCTGTCCGTACGGTTTTTCCGGCGGCGGAATCTTTAGCTGCTTCGG AAGATTTCTTGCGGAGAGATCTAGCGGAAAGTCTCCAGCTTTTCTCTTTGGCTTCATCGTGCTCGATCTGTTCTTCTCTACACTCT TTGCTACAAAACGCCTTGTCTCCTCTGTACATGAAGATATCTGAGTTGAGAGCGAGGTGTTTACGGCAGAGAGAGCAAGATTCCAG AAAGTGTGGCTCTTCGCTGCTGCCGAAGAAGCTATTGTAATGCGACGCCATTGCTAACACTAATCTTGAAAAAAATGACGAAAGCT TTGAAATTGAGGAAGAGAATCGACTGCAGAAGCAGAGATTTGAGATTCAGCTCGGAGAGGAAGGAGAAGGAAGGAGGAGGGGCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002880129 hypothetical protein ARALYDRAFT_483597 [Arabidopsis lyrata subsp. lyrata]	379	1e-034
NP_566023 uncharacterized protein [Arabidopsis thaliana]	372	9e-034
XP_002876541 hypothetical protein ARALYDRAFT_907544 [Arabidopsis lyrata subsp. lyrata]	299	3e-025
XP_002302507 predicted protein [Populus trichocarpa]	275	2e-022
ACU14475 unknown [Glycine max]	268	1e-021

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
O80506 At2g44670/F16B22.16	372	6e-034
B9GP89 Predicted protein	275	1e-022
C6SZ02 Putative uncharacterized protein	268	7e-022
C6SYH2 Putative uncharacterized protein	262	4e-021
A9PDB2 Predicted protein	260	6e-021

Arabidopsis top hits (Blast detail)	Score	e value
AT2G44670.1 senescence-associated protein-related	377	1e-036
AT4G17670.1 senescence-associated protein-related	237	2e-020
AT5G47060.1 senescence-associated protein-related	214	9e-018
AT1G78020.1 senescence-associated protein-related	173	5e-013
AT4G39795.1 senescence-associated protein-related	160	2e-011

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	4			27%


19	5			33%


10	2			13%


12	2			13%


20	1			7%


11	1			7%

Unigene Members	Member information