RadishBase

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Information for unigene UN21749

FASTA Sequence

Unigene ID: UN21749	Length: 1157	SSR	SNP
GGGAAAAAAGAAGAAGATGAACATAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGCTTCACACTAATTCTGTGTTCTTTTCAT CATCTCCGTCTCTTTCGGTTGATTTGCTTTGAGACTTTCCTCATCTAACTATCTTTACCTTAAAAATCAAAAAATCAGGATATCTG GAGGTTTGTGTTAGAGATGTATCCCTGTGGTTACGTTGCTGAAGTCACCAACTTGTCTCCTCGAGCCACTGAGAAAGATGTTCATA GTTTCTTCTCTCATTGCGGAATAGTCGAGCTTGTCGAGATCACTGGATGCGGAGGGAATGATGCGTTAACGGCTTATGTAACATTC AGAGATGCGTATGCTCTGGATATGGCCTTGTTACTTAACGGAGCTACGATCGTTGATCAGACCGTGTGGATATCCATGTACGGTGT CTATCTACACGAATCTAACAATCTCACACGAGAAGGAGACTATACTGTAACGGTTACTCAAAGTCACGCGGATACATTTGCTTCGT CGCCTGGAGAAGCAGTAACCATTGCTCAGCAAGTCGTCAAGACACTGATATCTAAAGGCTACGTTCTAAGCAAAGATGCATTCGGT AAAGCCAAGGCTTTGGACGAGTCTCAGAGATTCTCAAGCTCGGTAGCCAACAAATTGGCAGAGATCGGCCGTTACATTGGCCTCAC ACAAAACATTCAGTCCAGTATGGAAGCCGTGAGGTCAGCGGACGACAAGTATCACTTCTCTGATTTCACAAAATCAGCGGTTCTTG TCACTGGCACGGCTGCTGTGGCTGCAGCCACCATTACTGGAAAAGTGGCTGCTGCTGCTGCCACCACTGTGGTCAACAGTCGATAC TTTGCTAACGGGGCTTTATGGTTTTCAGATGCTTTGGGCCGGGCTGCAAAAGCAGCGGCCCATATGGGTGGTGGTGGTGGAAGCAG TTGATTATGTATCACAATATGAGGTTTTAAGCCATAAAGATGCTGGAATAAAAAAAAACATAAATGTATAATTAATACAATCACAT GATTTCCCTGCATGTTATATGAGAAATTGTAGACAAATTTTATAAATATTAAATAGTTATACATGGAAGGGGAATATATATGAGTT TTAAACTTTTTCTTTTATATAAAAAAGCTTATGTGTCCT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884289 nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]	1095	3e-117
NP_186770 RNA recognition motif-containing protein [Arabidopsis thaliana]	1093	6e-117
BAC43177 unknown protein [Arabidopsis thaliana]	809	5e-084
ACU21294 unknown [Glycine max]	688	5e-070
ABD32221 RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula]	663	4e-067

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q9MAD0 T4P13.10 protein	1098	1e-117
Q8GWX3 At3g01210	809	3e-084
C6THJ2 Putative uncharacterized protein	688	3e-070
Q2HVR6 RNA-binding region RNP-1 (RNA recognition motif)	663	3e-067
B9IJW1 Predicted protein (Fragment)	659	8e-067

Arabidopsis top hits (Blast detail)	Score	e value
AT3G01210.1 nucleic acid binding / oxidoreductase	1098	6e-120
AT1G14340.1 RNA recognition motif (RRM)-containing protein	404	2e-039
AT5G46870.1 RNA recognition motif (RRM)-containing protein	302	1e-027
AT4G17720.1 RNA recognition motif (RRM)-containing protein	301	1e-027
AT5G32450.1 RNA recognition motif (RRM)-containing protein	300	2e-027

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	1			4%


9	12			52%


12	4			17%


7	4			17%


6	2			9%

Unigene Members	Member information