RadishBase

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Information for unigene UN21784

FASTA Sequence

Unigene ID: UN21784	Length: 1400	SSR	SNP
GGAAAAGTTTTAGGGCTTTTAAAATCATCGGCGAGACGAAACTTTTAAACCGGCGAAACTTAGAGACGGCGGCGGCGGCGGCGAGG TGAGAGTTTGAAGGAAGACCGATGAAGATGAAATCAGTATTCGATGCGCCGGAGATCAAATCGGAGTTCGAGTCAGCGGGAATAAA CCCTAATTTCATGATCCCGATCTGGAAGTACGTAATTCAGAATCCCGATTGCGTTTGGGACGAGATCCCTTCGTTGCCCACCGCCG CATACACTCTCCTCCATTCAAAGTTCAAGACTTTCACTTCCTCTCTCCACTCCCTCTTCCACTCCTCCGATGGCACCACCTCTAAA CTCCTCATCAAGCTCCAGAATGGAGCTTTTGTGGAGGCTGTGATAATGAGATACGATACTCGGTTGGGGATGTGTGGAGGGAAGCC ACGTCCAGGTGGTGTGAGATCTACATTATGCATTTCATCACAGGTTGGTTGCAAAATGGGTTGCACGTTCTGTGCAACTGGTAGCA TGGGATTCAAAAGCAATTTAACATCGGGAGAAATTGTGGAGCAGCTTGTGCACGCCTCTCGCTTAGCTGATATACGCAACATTGTC TTCATGGGAATGGGAGAACCTTTGAATAACTACAATGCTGTTGTTGAAGCTGTCCGTGCCATGTTAAAACAGCCTTTTCAGCTCTC ACCCAAGAGAATTACCATTTCAACTGTTGGAGTTGTTCATGCGATAAACAAGCTTCACAATGATCTACCAGGCATAAGTTTAGCGG TATCTCTTCATGCACCAGTTCAAGAAATCCGCTGCCAAATCATGCCAGCAGCTAGAGCCTTTCCTCTTCAAAAGCTTATGGATGCA CTTCAAGCTTTCCAGAAAAGCAGTCAGCAGAAGATCTTCATTGAGTACATCATGCTTGATGGAGTAAATGATCAAGAGGAGAACGC TCATCAACTTGGCGAGTTGCTAAAGACATTTCAAGTGGTGATAAATTTGATACCATTCAACCCAATTGGGTCCACGAGCCAGTTCA AAACCAGTACTAAACAAAGCGTCTCAAGCTTCCAGAAGATCCTGAGGGAAACCTACAATATACGAACCACGGTTCGCAAAGAAATG GGTCAGGATATTAGTGGTGCTTGTGGTCAGCTAGTTGTGAACCAACCTGACAACAAGAGAACTCCGGAACCACTTAGAGACATTGA AGATCTGCATCTCTAACTTTAGGACCCAGACACATGAAACAGACATGAGAAAAGATGTATGGTTTGGTTTGTATTATCTTCGAAGT CACTCTTCAAAACTCTCTTCTTGAACTTCACATTTTGTTCCTCACTATCCAATGGAAAACACTTTGGCCTACCCTTGTAATGCAAG TAAGAAAAAAAAAAGATGGTCCTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_188597 radical SAM domain-containing protein [Arabidopsis thaliana]	1729	1e-190
XP_002300266 predicted protein [Populus trichocarpa]	1469	2e-160
XP_002265287 PREDICTED: hypothetical protein [Vitis vinifera]	1448	5e-158
NP_001049302 Os03g0202300 [Oryza sativa Japonica Group]	1326	7e-144
EEC74707 hypothetical protein OsI_10424 [Oryza sativa Indica Group]	1326	7e-144

Swiss-Prot top hits (Blast detail)	Score	e value
Q2RK16 Ribosomal RNA large subunit methyltransferase N	526	2e-052
Q6MDD0 Ribosomal RNA large subunit methyltransferase N 2	505	5e-050
B2A0B9 Ribosomal RNA large subunit methyltransferase N 3	502	1e-049
Q1DCU1 Ribosomal RNA large subunit methyltransferase N 1	498	3e-049
A1AL40 Ribosomal RNA large subunit methyltransferase N	497	4e-049

TrEMBL top hits (Blast detail)	Score	e value
Q84JV6 Putative uncharacterized protein At3g19630	1729	9e-191
B9GI88 Predicted protein	1469	1e-160
A5AF13 Putative uncharacterized protein	1448	3e-158
B8AQH6 Putative uncharacterized protein	1326	5e-144
Q10QB5 Os03g0202300 protein	1326	5e-144

Arabidopsis top hits (Blast detail)	Score	e value
AT3G19630.1 radical SAM domain-containing protein	1730	4e-193
AT2G39670.1 radical SAM domain-containing protein	492	1e-049
AT2G39670.2 radical SAM domain-containing protein	492	1e-049
AT1G60230.1 radical SAM domain-containing protein	474	2e-047

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	3			17%


9	7			39%


10	5			28%


18	1			6%


7	2			11%

Unigene Members	Member information