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Information for unigene UN21838

FASTA Sequence
Unigene ID: UN21838Length: 1084  SNP
GGAGCATGAGGAAGCGAGTGTTTGTTCTCCTTTGTGAAAAAAATCTCCGTTGACCTGAGGGAAACAAGAAAAAAAAAAAGAGAGGC
GAAGAAGAAGATGAAGATGAACGTTAGGGTTTTGTTTCTGGCTCTCCTTCTCCTCGCATCTCCTCTGCTCCAAGTTGCTAGATGTC
AAGTGGAAGATGATCATTCCAGCATTGTTGACGATGTTGTGGGAGAACACAGTGATTCTGGTGCTGAGGAAGATGACCAGGACTTG
GATCTCAACTTGACCTCAGCTCCAGGAGTTGAGACTGTCTCTGTTTTCCCCCAAAACAGTGGCAGATTGGTTATAGCTGGAGAAGA
TACTGAGCTCATTGTTGCTCTCAGGAATGATGGGAAATCTAGAGTTGGTGTGATGGGAATTAGGGCCAGCGTCCATCTTCCTTATG
ATCATAAGTTGTTGGTTCAGAATCTTACCGTCCTGAGAATCAACAATGCCTCCATCCCATATTCTGTTCAAGCAACATTCTCCTAC
GTCTTTGCTGTCAGCCAGTACCTACAGCCTGGAGCATTTGATCTGGTGGGTTATGTTATCTACGACGTGGAAGGGAAGGCATACCA
GAATGTCTTCTACAATGGAACCATTGAGGTGGTTGAATCTGGAGGTCTTCTCAGCGGTGAGTCTGTCTTCCTTATAACACTTGGGA
TTGCTCTCCTCCTCCTCGGTCTATGGGCATACAGCCAAGTTCAGCGTCTCACTAAGAAAACCAAAAAGGTGTCAAAGGTGGAAGTA
GGAACAAGGTCTGTCGACGCATCACTGGACGAGTGGCTCGAGGGAACTCATTTGGCCAAGACATTGTCTGGGAAATCAAAGAGCAA
GAAGAACTAAAAGAGAGCCTTTTTGGCTCCTTTACAGCTTATAGACTTCAGCTTTTGGCGTTTTTAAAGAGTTTTAAGTTTGTCTT
TGAGGAAGTTTTAGGGTTACGTTACCTCTTTTTTGTTCATGCATTGTACCATCTTAGACAATCTTTCTTTCTCTTCATACTATTCT
CCTCAACTGACCAGACCATTGCAAAAGAAAATAGAACAAAACAACATTAACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002878536 hypothetical protein ARALYDRAFT_480966 [Arabidopsis lyrata subsp. lyrata]10837e-116
AAM63845 putative signal sequence receptor, alpha subunit (SSR-alpha) [Arabidopsis thaliana]10774e-115
NP_565498 translocon-associated protein subunit alpha [Arabidopsis thaliana]10731e-114
AAA21820 alpha-subunit; putative [Arabidopsis thaliana]10561e-112
NP_001077930 translocon-associated protein subunit alpha [Arabidopsis thaliana]7655e-079

Swiss-Prot top hits (Blast detail)Scoree value
P45434 Translocon-associated protein subunit alpha10735e-116

TrEMBL top hits (Blast detail)Scoree value
Q8LC49 Putative signal sequence receptor, alpha subunit (SSR-alpha)10772e-115
Q5M727 At2g2116010737e-115
A9PFV9 Predicted protein7555e-078
B9STC6 Translocon-associated protein, alpha subunit, putative7539e-078
B9HRA7 Predicted protein7493e-077

Arabidopsis top hits (Blast detail)Scoree value
AT2G21160.1 translocon-associated protein alpha (TRAP alpha) family protein10743e-117
AT2G21160.2 translocon-associated protein alpha (TRAP alpha) family protein7652e-081
AT2G16595.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: translocon-associated protein alpha (TRAP alpha) family protein (TAIR:AT2G21160.1); Has 191 Blast hits to 191 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 18; Plants - 38; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).6228e-065

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
105  22%
 
96  26%
 
64  17%
 
113  13%
 
123  13%
 
72  9%

Unigene MembersMember information