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Information for unigene UN21845
| FASTA Sequence |
| Unigene ID: UN21845 | Length: 895 |
| SNP | GAAGGAGCCGAGGCAAAGAGGTTTATTCAGTTATCTTCTTCATCCTCACAAAAAAAAACCCTAACCTCTCGTAGCAATGGCGATTG
CAACATCGATGAGTTTGAATCTAATCGGAGCATTCAAAGGCTTATCCCTCTCTTCAACCTCGTCCTTCCTCAGAGGCGATTTGATT
CTAAACCCTAAAACCTCCTTCACTGTGACTCTCCCTTTGGAAAAACTCCAAGCTCCGATTCCATTGACGATTGAATCCGCGCACAA
GAAAGGAGCTGGGAGTACTAAGAACGGTCGTGATTCTCCGGGACAAAGACTCGGCGTCAAGATTTACGGTGACCAAGTCGCTAAAC
CAGGGGCCATCATCGTTCGTCAACGTGGCACTAAGTTCCATGCTGGAAAGAACGTTGGGATTGGTAAAGATCATACCATCTTCTCT
TTAATCGATGGGTTAGTCAAGTTCGAGAAGTTTGGTCCTGACAGGAAGAAGATTAGTGTGTACCCAAGGGAAGTTGTGCCAGAGAA
TCCCAACAGTTACAGAGCAAGAAAGAGAGAAGCTTTTAGAGTGCAAAGGGAGAAGAAGAAGGCCAGACGCGAGAACTACACTTACA
CACTTCCTACCCCTCAGCTTGTGCTTGCATCTGCTGCGGTCGATGATGAGGAAACCAATACCGATTGCTGAAATTCATATGTGAAT
CTGTCTTTGTCCTCTCGTTATGTTTAGTCTTTGTTTATGATCATTTTCCCTTTGCTAATTTACAAAGAGGCTTTGTTTCAATGGTC
CAAGAGTTGTTGTGTGTGTCCAACTCAAACCTCACTTTTGTCAAATTGAGTTCAAGCCTTCGGATTTTATCCTACCCGAGATCACC
ACGAGTGTAATCTAATTGATTATTGTTCATTAGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ACQ90306 auxin-repressed protein 1 [Brassica rapa subsp. pekinensis] | 986 | 9e-105 |
| NP_198911 50S ribosomal protein L27 [Arabidopsis thaliana] | 943 | 9e-100 |
| XP_002870663 hypothetical protein ARALYDRAFT_493880 [Arabidopsis lyrata subsp. lyrata] | 936 | 6e-099 |
| AAM62675 50S ribosomal protein L27 [Arabidopsis thaliana] | 929 | 4e-098 |
| XP_002509506 ribosomal protein L27, putative [Ricinus communis] | 700 | 1e-071 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FLN4 50S ribosomal protein L27, chloroplastic | 943 | 4e-101 |
| P30155 50S ribosomal protein L27, chloroplastic | 655 | 1e-067 |
| O65037 50S ribosomal protein L27, chloroplastic | 582 | 3e-059 |
| A6Q4D3 50S ribosomal protein L27 | 313 | 5e-028 |
| Q10ZG7 50S ribosomal protein L27 | 313 | 5e-028 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C4PJS4 Auxin-repressed protein 1 | 986 | 7e-105 |
| Q8LEF5 50S ribosomal protein L27 | 929 | 3e-098 |
| B9RBH2 Ribosomal protein L27, putative | 700 | 9e-072 |
| A5BCW1 Putative uncharacterized protein | 679 | 3e-069 |
| A9PJG1 Putative uncharacterized protein | 655 | 2e-066 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G40950.1 RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27); structural constituent of ribosome | 944 | 3e-102 |
| AT2G16930.2 ribosomal protein L27 family protein | 225 | 7e-019 |
| AT2G16930.1 ribosomal protein L27 family protein | 225 | 7e-019 |
| AT2G16930.3 ribosomal protein L27 family protein | 225 | 7e-019 |
| AT5G15220.1 ribosomal protein L27 family protein | 225 | 7e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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