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Information for unigene UN21859

FASTA Sequence
Unigene ID: UN21859Length: 1100  SNP
GGCTCACACGCTCTGTCTTCTCCCTTCTGGTTGGATTAGATATTTAGGGCTTTGAAGCCGAACGCTTGAAGCTACTAAAATCGAGC
AAAAAAAAAATGGAGATAGCGGAGCGTAGGGAGGAGGAGATCAGAGAATCGGGAAACATGGAGAACATAAAGTCAGACTCTTTTTC
CGATGAACGCTACTCTCGCGACCTCAAAGCTGGTCTTCATCCTCTTCGGTACAAGTTTGCGATTTGGTACACACGTCGGACACCAG
GGGTGAGGAGCCAGACATCTTATGAGGATAACATTAAGAAGATTGTTGATTTCAGCACGGTGGAAGGGTTTTGGGCATGCTACTGT
CACCTAGCTCGTTCTTCTCTCTTGCCTAGTCCTACTGATCTTCATTTCTTCAAGGATGGCATTCGCCCCTTGTGGGAGGATTCTGC
TAACTGCAATGGAGGAAAGTGGATCATACGTTTCTCCAAAGTTGTATCCGCTCGCTTCTGGGAGGATCTGCTTCTTGCCTTGGTAG
GGGACCAGCTTGATGATGCTGACAATATCTGTGGGGCAGTACTGAGCGTCCGCTTCAACGAGGACATTATTAGTGTATGGAATCGC
AATGCTTCTGATCATCAGGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGCTGCCTCATGCTTATGTTATGGAATA
CAAACCCCACGATGCTTCTCTCCGCGACAACTCCTCCTACAGGAACACATGGATGAGAGGATAGAAGTAGACCATTGTGTAACGTG
ATGTGGAGAAAGATTTGGGTAGCTCTCTTGCAACCTTGGAAGAAGATGTATGGACTGAAACCCTGTTTCCTGTAGCACACTTTATC
AACATTATATTTTTCCAATTACACTTTCAGACACTTGTGAATGGAGACACACATTGTTTATGTGCATTGTCTTTAGTACCCTCACT
TTACTACATTTATTTTTTAGTTCTAGTTCTCTTCCAACAAGTGCAATCTGTCAAATTTGTAAAATAATAATTTATCTCTTAACCTT
TCTTTTCTCTCTCCCACTTTCGAAATCAGATTTTGAAAGTAAATCCATTTCCAATTTATCTTTAGTAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002873873 cap-binding protein nCBP [Arabidopsis lyrata subsp. lyrata]10659e-114
AAC17220 novel cap-binding protein nCBP [Arabidopsis thaliana]10632e-113
NP_197312 translation initiation factor eIF-4E [Arabidopsis thaliana]10551e-112
XP_002525418 eukaryotic translation initiation factor 4e type, putative [Ricinus communis]9592e-101
XP_002281697 PREDICTED: hypothetical protein [Vitis vinifera]9483e-100

Swiss-Prot top hits (Blast detail)Scoree value
Q9FK59 Eukaryotic translation initiation factor 4E type 310556e-114
O60573 Eukaryotic translation initiation factor 4E type 24902e-048
Q8BMB3 Eukaryotic translation initiation factor 4E type 24883e-048
Q22888 Eukaryotic translation initiation factor 4E-44346e-042
Q9DFS6 Eukaryotic translation initiation factor 4E-1A3172e-028

TrEMBL top hits (Blast detail)Scoree value
B9SHE9 Eukaryotic translation initiation factor 4e type, putative9591e-101
D3TI43 Cap-binding protein-like protein9366e-099
C6SW38 Putative uncharacterized protein9357e-099
C6T2J3 Putative uncharacterized protein9312e-098
B9I5X1 Predicted protein9241e-097

Arabidopsis top hits (Blast detail)Scoree value
AT5G18110.1 NCBP (NOVEL CAP-BINDING PROTEIN); RNA binding / translation initiation factor10564e-115
AT4G18040.1 EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E); RNA binding / RNA cap binding / protein binding / translation initiation factor3011e-027
AT1G29550.1 eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative2591e-022
AT1G29590.1 eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative2535e-022
AT5G35620.1 LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1); RNA 7-methylguanosine cap binding / RNA binding / translation initiation factor2535e-022

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
73  20%
 
124  27%
 
114  27%
 
62  13%
 
81  7%
 
201  7%

Unigene MembersMember information