RadishBase

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Information for unigene UN22016

FASTA Sequence

Unigene ID: UN22016	Length: 1586	SSR	SNP
GGATAGTCGCTTTTCAGAACTCTTTTGCCGGCGATCCCCGTCTCTCTCTCTCTCCGAATAGGCAATTGAGATGGCAACTCCAATGG TAGAAGACACGTCAAGCTTCGAAGAGGATCAGCTCGCGTCCATGTCCACCGAAGACATCGTTAGAGCTACTCGTCTCCTCGACAAC GAGATTCGAATTCTCAAGGAAGATGCACAAAGAACAAATCTAGAATGCGATTCTTACAAGGAGAAGATAAAGGAGAATCAGGAGAA GATTAAACTCAACAAGCAGCTTCCTTACTTGGTTGGCAACATTGTTGAGATATTGGAGATGAATCCGGAAGATGATGCTGAGGAAG ACGGTGCTAATATCGACCTTGACTCTCAAAGGAAGGGAAAGTGTGTTGTCTTGAAAACATCTACACGACAGACAATCTTTCTACCA GTTGTTGGTCTGGTGGACCCCGATAGCCTGAAGCCTGGTGATTTGGTTGGAGTGAATAAAGACAGTTACCTGATTTTGGACACGTT GCCGTCAGAGTATGACTCTAGGGTTAAAGCCATGGAGGTCGATGAGAAACCTACCGAAGATTACAATGACATTGGAGGACTAGAGA AGCAGATCCAAGAGCTTGTAGAGGCAATCGTGCTCCCCATGACCCACAAGGAGCGTTTCGAGAAGCTGGGTGTTCGTCCACCCAAG GGAGTGCTTTTGTATGGTCCTCCAGGGACTGGTAAAACTTTAATGGCACGTGCCTGTGCAGCACAGACTAATGCCACCTTCCTAAA ATTAGCAGGTCCACAACTGGTCCAGATGTTTATTGGAGACGGAGCTAAACTTGTCCGTGATGCCTTTCAACTAGCAAAAGAGAAAG CTCCATGTATTATCTTCATTGATGAAATCGATGCAATTGGTACAAAGCGTTTTGACAGTGAAGTAAGCGGAGACAGGGAAGTGCAG AGGACTATGTTGGAACTGCTCAATCAGCTTGATGGATTCAGTAGCGATGAGCGTATTAAGGTGATAGCAGCCACTAACCGTGCAGA TATTCTGGACCCAGCACTCATGCGTTCTGGTCGACTAGACAGGAAGATTGAGTTCCCACATCCAACGGAAGAAGCAAGAGCCAGAA TCTTGCAGATTCACTCGAGGAAGATGAATGTACACCCAGACGTCAACTTTGAGGAGCTTGCAAGATCGACAGATGATTTCAATGGC GCTCAACTGAAAGCTGTATGTGTGGAGGCTGGCATGTTAGCTTTTTGTCGCGATGCCACAGAGGTGAACCATGAGGACTTTAATGA AGGTATAATCCAAGTCCAGGCCAAGAAGAAAGCAAGTTTGAACTACTACGCCTAGTCTCTCCCTGTCAGTTATATTCGTGTTTGCT CTCTATCTTTCAACTAGTGTTTATTCCGGTTGGAAACTTTTCATATTTTCGAATCAGGATATCTTTTATCAAAGTGCATTTAGTTT TGTTCATTTTATTTTTTTTTTGAAACAAGAAAAGGAACTTTGATAGTTTACCACCTCTTATAATTTTATTGTTGAATTGTGTTTGC CAGAAAAATTCATAAGTACATTTTAAGCAGTTTCTGTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAB21595 Tat binding protein like protein [Brassica rapa]	2136	1e-237
O23894 RecName: Full=26S protease regulatory subunit 6A homolog; AltName: Full=Tat-binding protein homolog 1; Short=TBP-1	2132	3e-237
NP_187204 regulatory particle triple-A ATPase 5A [Arabidopsis thaliana]	2132	3e-237
AAN15459 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis thaliana]	2123	3e-236
AAD46145 19S proteasome regulatory complex subunit S6A [Arabidopsis thaliana]	2122	4e-236

Swiss-Prot top hits (Blast detail)	Score	e value
O23894 26S protease regulatory subunit 6A homolog	2132	1e-238
Q9SEI2 26S protease regulatory subunit 6A homolog A	2132	1e-238
P54776 26S protease regulatory subunit 6A homolog	2023	5e-226
P46465 26S protease regulatory subunit 6A homolog	1995	9e-223
O04019 26S protease regulatory subunit 6A homolog B	1994	1e-222

TrEMBL top hits (Blast detail)	Score	e value
Q9AYS9 Tat binding protein like protein	2136	7e-238
B9I7I1 Predicted protein	2050	6e-228
B9N4I9 Predicted protein	2049	8e-228
A5AEY4 Putative uncharacterized protein	2043	4e-227
B7FKW8 Putative uncharacterized protein	2037	2e-226

Arabidopsis top hits (Blast detail)	Score	e value
AT3G05530.1 RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A); ATPase/ calmodulin binding	2133	8e-240
AT1G09100.1 RPT5B (26S proteasome AAA-ATPase subunit RPT5B); ATPase/ calmodulin binding	1995	8e-224
AT4G29040.1 RPT2a (regulatory particle AAA-ATPase 2a); ATPase	835	3e-089
AT2G20140.1 26S protease regulatory complex subunit 4, putative	833	4e-089
AT1G53750.1 RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase	780	6e-083

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			17%


10	1			8%


7	2			17%


11	2			17%


18	1			8%


21	1			8%


20	1			8%


12	2			17%

Unigene Members	Member information