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Information for unigene UN22107
FASTA Sequence |
Unigene ID: UN22107 | Length: 1542 |
SSR | SNP | GCACCAGCAACAATCAGTTTGGCTGAAAGAGTAGCACTTTTCTCCATCTGGTCGTAGTCGATGAAGCCAGTGCTCTCGTCCAAGCG
GTAGGGCATTGTTTCAAAGAAGATAGACACAGCAGATATCTTCTTGGTGTCAGTCTGATAACCATGAGAAAGATGACCACCGTGAG
GAAGATCAAGTGCCATGATTCTCTCATGAGGCTTCAACAATGCAGTGTACACATGGAAGTTGGCAGGTGATCCAGACAAAGGTTGG
ACATTCACTCCCCACTTCTCAGGGTCTAACCGGAAAGCTTCTAGAGCACGCTTCTGGCACAAGGTTTCCGCCATGTCTATGTACTC
ATTTCCTCCATAGTATCTAGCACCAGGGTACCCTTCACTGTACTTGTTAGTCATCACAGAGCCAACAGCTTGCATCACCGAGACAG
ATGTGAAATTCTCAGATGGAATGAGTTCAAGCCCTTTCCACTGTCTAGCTTTCTCATGCTCAATGATGTCAGCAATCTCAGGATCA
ACTTCCTCCAAAGATGCGTTCAGCTGTTTTGGCCAAGTGACACGAGATCTCTCCTTGTCATCGACAGCTTCACTGGGCAAAGAAGA
CATGTAGCACGAGGATGATCTGATAAGAGGACGAATAGGTTTGTCAACTGAAGAAGAAAGTCTCCTAAGAGCCATTGCCATCGCCA
TTTTTGCTCTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGATCTCTCGGTTACATTCTACAGAGTAAGATGGG
GTTGAGTTTCGCAAAGCTGTTTAGCAGGCTCTTTGCAAAGAAGGAGATGAGGATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGA
CCACTATCTTGTACAAGCTCAAGCTCGGTGAGATTGTCACCACCATCCCCACTATTGGTTTCAATGTGGAAACTGTGGAGTACAAG
AACATCAGTTTCACTGTGTGGGATGTTGGGGGTCAGGACAAGATTCGTCCCTTGTGGAGGCACTACTTCCAGAACACTCAGGGTCT
GATCTTTGTCGTGGACAGCAACGACAGAGACAGAGTTGTTGAGGCTAGAGATGAACTGCACAGGATGCTCAATGAGGACGAGCTGC
GTGATGCTGTGCTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCGATGAATGCAGCTGAAATCACAGATAAGCTTGGTCTT
CACTCCCTGCGTCAGCGTCACTGGTACATTCAGAGCACATGCGCCACTTCAGGTGAAGGACTGTACGAAGGTCTGGACTGGCTGTC
CAACAACATCGCTGGCAAGGCGTAATGAGGGTGAGTTGCAGTTGCATCGAGCTGATTGTGTCTTCTGTGATGCAAAGAAACGATTA
TAAATATTATCTGGACCTTTTTGCATATTGGGTATGTGAATGTTTTGATTGTGCAAGTAGATGTCTTGTCTTTAAAACTTACTAGA
AGAACCCATTTAAATAAGTTTTCGTGTATTTTGAATATGGATATGTTCCTTTGCAAGAAGCGTCTACGTTATTTTGTACC
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GenBank top hits (Blast detail) | Score | e value |
NP_195506 glycine hydroxymethyltransferase [Arabidopsis thaliana] | 1146 | 6e-123 |
XP_002866922 hypothetical protein ARALYDRAFT_490821 [Arabidopsis lyrata subsp. lyrata] | 1146 | 6e-123 |
AAL06913 AT4g37930/F20D10_50 [Arabidopsis thaliana] | 1141 | 2e-122 |
BAJ33788 unnamed protein product [Thellungiella halophila] | 1135 | 1e-121 |
ACM45955 serine hydroxymethyltransferase 5 [Glycine max] | 1058 | 1e-112 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q9SZJ5 Serine hydroxymethyltransferase, mitochondrial | 1146 | 2e-124 |
P50433 Serine hydroxymethyltransferase, mitochondrial | 1041 | 4e-112 |
P34899 Serine hydroxymethyltransferase, mitochondrial | 1020 | 1e-109 |
P49357 Serine hydroxymethyltransferase 1, mitochondrial | 1017 | 2e-109 |
P49358 Serine hydroxymethyltransferase 2, mitochondrial | 982 | 3e-105 |
TrEMBL top hits (Blast detail) | Score | e value |
C6ZJZ0 Serine hydroxymethyltransferase | 1058 | 7e-113 |
A9YWS0 Serine hydroxymethyltransferase | 1042 | 5e-111 |
B9SMK7 Serine hydroxymethyltransferase | 1036 | 2e-110 |
Q677H6 ADP-ribosylation factor (Fragment) | 937 | 7e-099 |
B2Z3W8 Putative ADP-ribosylation factor | 934 | 2e-098 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT4G37930.1 SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) binding | 1146 | 2e-125 |
AT5G26780.1 SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 955 | 3e-103 |
AT5G26780.3 SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 955 | 3e-103 |
AT5G26780.2 SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 955 | 3e-103 |
AT1G70490.1 ARFA1D; GTP binding / phospholipase activator/ protein binding | 939 | 2e-101 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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