RadishBase

| | | |

Information for unigene UN22193

FASTA Sequence

Unigene ID: UN22193	Length: 1237	SSR	SNP
GAGTTTCTAAATCACAGACCCTGCGACTTATAAATAAGCAATAGCTTTATTAAATTATTTGTTTTTCCTTGTTTGATTCGAAGCAC AACGAATACTTATATAGTACACAACAGATCATAAAATAAACTGAGCAGAGACAGTTCCTTGATCAACCCCTCAACGAATACTTCTT CCCAGTGAAAGCTTGGAACTTTGGCTCTTCTTTCTTCTCCTCTTCCTCTTGTTTTGTCTCTTTCCCAGCTCCAACCTTTGGAGCTT CTTTTGGGGCACGGTTTGCGTTGCCCCCAAACACAAGCTTTCCTTGAGCCTGTCGAGCAGCTTTCTCTGAGCTACTACTTGCTACA GATGCCTGTCCATTGCCATTAGCAACAGCTGGCTGTTTATCTTTTGAGCTAGAGGAAGAAGAAGAAGATGCTGGTGGCGGCTCATA GGAAAGAGGTCTCCCATCTAACCGTCTTCCAGATCCCGTGAAAGGGTTGAACTTTGGTTCAGGTTCAGGCACAACTTCCTCAGCTT TTGCCGGACCCTTAGCTGCAGCAGGTGCTGTTTTGGGACGTTCAGGCTCCTTGTAATCAAGGGGAGGTGCAAAATCAACCTCACAG TCTGTTTCTATGATGCTGATTCCATTAGCAGGCTTTGTTTCAACTATATCTATAAAGTACTTCTTATTGTTGTATGGAACCATGAT GCTATCCCCAGTGGTTAGGCATGAGTAGTTCCTCAAAGCAGTCTCCAAGATGGCTTTCGGATTAGATATATCCAGGAAGTCCGTAG TGTGCGGCTGTAGTTTAACATAGGTTCCTTTTGGAAGAGTGACATTTCTAACTCTCACAATGTCTCCTTCTTGCAGCAGCAGATTC TGCATCATCCAATATGGCATGTAAATCATGCCTTCTTCAGCAATGAACTCAAGGACTCCACAGTGTGAAACACGTTCGATTCCAGC ATTACGAAGCTCAAACAGCATAGGATAGTCAATATGCAAAGAGGCGAGACGGTCAAGAGCTGATGGTGGCATTATAATCTTGTCAC CACTTTCAATTTGAGGCTTGTCGATAAAAGATGCAGGATAGCACCGGTAACTCTGCTCAAAGGTGGTTCCAGGGTAATGGTATCCA TCGAAAAACATAGTTTAGGTGGTAGATAAATAACGCAGAGAAGAACCAACTTCCAACCTGTGAGAGAGAAGAGAGAGAGAGAGAAC AATTGATGGAACTCAACACGGAAGCAAAGTCCT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002878541 hypothetical protein ARALYDRAFT_480987 [Arabidopsis lyrata subsp. lyrata]	1504	1e-164
AAM64897 putative ubiquitin fusion-degradation protein [Arabidopsis thaliana]	1492	3e-163
NP_001077933 ubiquitin fusion degradation 1 [Arabidopsis thaliana]	1488	1e-162
NP_565504 ubiquitin fusion degradation 1 [Arabidopsis thaliana]	1483	4e-162
XP_002313007 predicted protein [Populus trichocarpa]	1346	3e-146

Swiss-Prot top hits (Blast detail)	Score	e value
Q9ES53 Ubiquitin fusion degradation protein 1 homolog	629	2e-064
P70362 Ubiquitin fusion degradation protein 1 homolog	623	8e-064
Q92890 Ubiquitin fusion degradation protein 1 homolog	621	1e-063
Q55BK0 Ubiquitin fusion degradation protein 1 homolog	601	3e-061
Q9VTF9 Ubiquitin fusion degradation protein 1 homolog	571	9e-058

TrEMBL top hits (Blast detail)	Score	e value
Q8LB95 Putative ubiquitin fusion-degradation protein	1492	2e-163
A8MQW3 AT2G21270 protein	1488	7e-163
Q9SJV0 At2g21270	1483	3e-162
B9HRF2 Predicted protein	1346	2e-146
A9PHT5 Putative uncharacterized protein	1341	7e-146

Arabidopsis top hits (Blast detail)	Score	e value
AT2G21270.3 ubiquitin fusion degradation UFD1 family protein	1525	2e-169
AT2G21270.1 ubiquitin fusion degradation UFD1 family protein	1520	7e-169
AT2G21270.2 ubiquitin fusion degradation UFD1 family protein	1520	7e-169
AT4G38930.2 ubiquitin fusion degradation UFD1 family protein	1269	9e-140
AT4G38930.1 ubiquitin fusion degradation UFD1 family protein	1254	5e-138

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	6			17%


6	11			31%


7	2			6%


9	4			11%


11	4			11%


19	1			3%


18	2			6%


12	2			6%


8	3			9%

Unigene Members	Member information