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Information for unigene UN22278

FASTA Sequence
Unigene ID: UN22278Length: 2377 SSRSNP
GGACACTTATCACGCCACCTCATCACCCCCCTCCTCTCTAGCTTCGGATATTCATTATCATTATGGATATCCGACGGAGGCCTCCT
AAACCGCCGGTTAACTCAAACCGGTTCCTCGATAACCGTTCCGATGACGACGATCGTCGCAAGACTCTCACCTCTCCTCCAAAGGC
CTCCGACGCGCTCCCGCTCCCTCTCTACCTCACCAACGCCGTCTTCTTCACCCTCTTCTTCTCCGTCGCCTACTACCTCCTCCACC
GCTGGCGCGACAAGATCCGCTACAACACCCCTCTCCACGTCGTCACCGTCACCGAGCTCGGCGCCATCGTCGCCCTCATCGCCTCC
TTCATCTACCTCCTCGGCTTCTTCGGCATCGATTTCGTCCAGTCCTTCATCTCACGCCCCGACTCCGGCGACTCCGAGAGAGACTT
CGACGACCACCGCCTCGTCACCTGCCCTCCTCCTCCTCCTCCCTCGCAGATCGTCGCCGCCAAGCTTCCGAATCCGGAGCAGCCGC
CTCTCCCCGAGGAAGACGAGGAGATCGTCAAATCGGTCCTCGACGGCGTCGTCCCTTCGTACTCTCTCGAATCTCGTCTCGGAGAT
TGCAAGAGAGCCGCGTCGATTAGGCGCGAGGCGCTGCAGAGGCTTACGGGAAGGTCGATCGAGGGATTGCCGTTGGATGGATTCGA
TTACGATTCGATCTTGGGGCAATGCTGTGAGATGCCTGTGGGATACATTCAGATCCCCGTGGGGATCGCTGGGCCGTTGTTGCTTG
ACGGTTATGAGTATTCTGTTCCGATGGCTACTACGGAAGGGTGTTTGGTTGCGAGTACTAACAGAGGGTGTAAGGCTATGTACGTC
TCTGGTGGTGCCACCAGTACGGTGCTTAAGGATGGTATGACTCGTGCTCCTGTCGTTAGGTTCGCTTCCGCTAGGAGAGCTTCTGA
GCTCAAGTTCTTCTTGGAGAGTCCTGAGAACTTTGAGACTCTGGCCGTCGTTTTCAACAGGTCAAGTAGGTTTGCGAGGCTACAGA
GTGTTATGTGCACGCTCGCTGGGAAGAATGCTTATGTGAGGTTCAGTTGTAGTACTGGTGATGCTATGGGGATGAATATGGTATCC
AAAGGTGTGCAGAATGTTCTCGAGTTTCTTACTGAGGATTTTCCTGACATGGATGTGATTGGAATCTCTGGTAACTTTTGTTCGGA
CAAGAAGCCTGCTGCTGTGAACTGGATCGAGGGACGTGGCAAATCAGTTGTTTGCGAGGCAGTAATCAGAGGAGAGACCGTGAACA
AGGTGTTGAAAACGAGCGTGGCTTCTTTGGTGGAGCTCAATATGCTCAAGAACCTTACGGGCTCTGCTATTGCAGGCTCTCTAGGT
GGATTCAACGCTCACGCCAGCAACATTGTCTCTGCTGTGTTCTTAGCAACTGGTCAAGATCCAGCTCAAAACGTTGAGAGCTCTCA
GTGTATCACAATGATGGAAGCCATTAATGACGGGAAAGATATCCATATCTCGGTCACTATGCCATCTATTGAGGTGGGGACAGTGG
GAGGAGGAACACAGCTTGCGTCACAATCAGCGTGTTTGAACTTGCTCGGAGTTAAAGGAGCAAGCAAGGAGTCGCCGGGGATGAAC
TCAAGGAGGCTAGCGACGATAGTGGCAGGAGCAGTTTTGGCAGGAGAGTTATCACTTATGTCAGCAATAGCAGCTGGACAACTTGT
GAGGAGTCACATGAAATACAATAGATCCAGCAGAGACATCTCTGGAGCGACGACAACAACATGATCTGAATCATCATCATCTCTGT
CTGGCCCAAAACTCGAAGGAGGACAAAAATGTAAAAGAAGGCAGGCTTTTTACAACTCATATTCACTCATAACTCTGTGGTGGACA
ACACACTTAGCCATGTGCGTGCCTTTGCCTTCTTTTGTTCAATAAAAACTTAAAATTGTTTTTGTTTGTTTGTTTTGTTTTTTTGT
TTGACTTGTAAACTCTTTTTTTTTTTAATGTGGGGATTAAGAGTGAGAGAGGGAGAGATTTGTGATTGTCATTGTCTCCTTCTTTC
CTCTATCTCTCTCACTCATGGATAATTCATGTTCTCTTTGATTTGTCTAAGCTTTGTCTTCTGTTTGTTAGCAAGTATATTGTGTC
TTGTCAATATGATGATGGAAAACATGTATGCAGTTGCGTTTAAGGATATGAGTGGGTACTCGTGTTTTTGTGTGTTTCTTTCGTTA
TATAGGAAGGTAAGATACGGATCTTTTTCTTCCAAAAGATTCCACCACCCATATATTTGCCTATTTGGGTCTACACTTACCGTTTA
GCATTGATTAAATAAGAGAAAAAGGAAAGTGTTTTCTTTTGTGTTCCACTAGATC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
CAA48611 hydroxymethylglutaryl-CoA reductase (NADPH) [Raphanus sativus]29180.0
XP_002887642 3-hydroxy-3-methylglutaryl CoA reductase [Arabidopsis lyrata subsp. lyrata]26021e-291
P14891 RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1; Short=HMGR125984e-291
NP_177775 hydroxy methylglutaryl CoA reductase 1 [Arabidopsis thaliana]25984e-291
XP_002510732 hmg-CoA reductase, putative [Ricinus communis]22956e-256

Swiss-Prot top hits (Blast detail)Scoree value
P14891 3-hydroxy-3-methylglutaryl-coenzyme A reductase 125982e-292
Q41438 3-hydroxy-3-methylglutaryl-coenzyme A reductase 321261e-237
O24594 3-hydroxy-3-methylglutaryl-coenzyme A reductase19565e-218
P43256 3-hydroxy-3-methylglutaryl-coenzyme A reductase 219233e-214
P29057 3-hydroxy-3-methylglutaryl-coenzyme A reductase 119029e-212

TrEMBL top hits (Blast detail)Scoree value
Q43826 Hydroxymethylglutaryl-CoA reductase (NADPH)29180.0
Q6RW12 3-hydroxy-3-methylglutaryl coenzyme A reductase isoform 1L25983e-291
B9R8T9 Hmg-CoA reductase, putative22954e-256
Q9ZWF9 3-hydroxy-3-methylglutaryl coenzyme-A reductase22507e-251
Q1HB06 3-hydroxy-3-methylglutaryl-coenzyme A reductase22193e-247

Arabidopsis top hits (Blast detail)Scoree value
AT1G76490.1 HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1); hydroxymethylglutaryl-CoA reductase25982e-293
AT2G17370.1 HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2); hydroxymethylglutaryl-CoA reductase19233e-215
AT1G62760.1 invertase/pectin methylesterase inhibitor family protein1795e-013
AT3G24550.1 ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1); ATP binding / protein kinase1553e-010
AT4G18670.1 protein binding / structural constituent of cell wall1544e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
103  12%
 
74  15%
 
151  4%
 
116  23%
 
63  12%
 
124  15%
 
191  4%
 
82  8%
 
92  8%

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