 |
Information for unigene UN22286
| FASTA Sequence |
| Unigene ID: UN22286 | Length: 1019 |
| SNP | GGCAGAAAAAAAACTAACACACAAAAACCAACCAAAAGCAAAAGTCTTCAAGTTTTAAAAAATGGTGAAGATCGCAGTTGGAAGTT
TGGGTGACTCATTCAGTGTTGCATCTCTGAAGGCTTACTTGTCTGAGTTCATCGCAACTCTTATCTTTGTATTCGCTGGTGTTGGC
TCTGCTATTGCTTTTGGCAAGATAACCTCTGACGCAGCCTTGGATCCAGCTGGTCTTGTGGCTATTGCGGTGGCTCACGCCTTCGC
GTTGTTTGTCGGAGTTTCGGTGGCAGCTAACATCTCTGGTGGCCACTTAAACCCAGCCGTGACTCTCGGTCTTGCTGTTGGAGGAA
ACATCACACTGATCACAGGTTTCTTGTACTGGGTTGCTCAGTGTCTTGGCTCCATCGTTGCATGCCTTCTCCTTGTCTTCGTTACC
AACGGCGAGAGCGTACCGACCCACGGAGTTGGAGCCGGTTTAGGAGCGGTCGAAGCTATCGTGATGGAGATCATTGTGACCTTTGC
TTTGGTCTACACCGTTTACGCCACAGCTGCTGATCCAAAGAAAGGTTCGCTCGGAACCATCGCACCTATCGCTATTGGTTTCATCG
TTGGTGCCAACATCCTTGCTGCTGGTCCATTTAGCGGTGGCTCCATGAACCCAGCAAGGTCGTTCGGACCAGCTATTGTAAGTGGA
GACTTGTCACAAATCTGGATATACTGGGTGGGTCCACTCGTTGGTGGTGCACTTGCTGGACTCATCTACGGAGACGTGTTCATCGG
TTCTCCTTACGAATCTGTTGAAACCCGCGAGATCCGAGTTTAAATTAACCGGGTTTGTGGTTGTTTGATGTTTGCTTGTTGGTTGG
TTTGATGGTTGTGTGTTTGCTTGGGTATGTTTGATGTCCCTTTTCTTTTAAGATTGCCTGTAGAGAAAAGAGTCATCTCTTGCTAA
TAATAAGAAAATGTATATTATTCCACTGCCTTGTGAAAATCTGATTATGAATTGAAATTTTTTAAAATTGATT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABD64981 tonoplast intrinsic protein, putative [Brassica oleracea] | 1236 | 1e-133 |
| ABD65010 tonoplast intrinsic protein, putative [Brassica oleracea] | 1181 | 3e-127 |
| NP_199556 aquaporin TIP2-3 [Arabidopsis thaliana] | 1173 | 2e-126 |
| BAF01204 membrane channel protein-like [Arabidopsis thaliana] | 1166 | 2e-125 |
| XP_002863344 AtTIP2_3 [Arabidopsis lyrata subsp. lyrata] | 1165 | 2e-125 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FGL2 Aquaporin TIP2-3 | 1173 | 1e-127 |
| Q41975 Probable aquaporin TIP2-2 | 1142 | 4e-124 |
| P33560 Probable aquaporin TIP-type | 1058 | 2e-114 |
| P21653 Probable aquaporin TIP-type RB7-5A | 1048 | 3e-113 |
| P24422 Probable aquaporin TIP-type RB7-18C | 1042 | 2e-112 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2A9S7 Tonoplast intrinsic protein, putative | 1236 | 8e-134 |
| Q2A9N6 Tonoplast intrinsic protein, putative | 1181 | 2e-127 |
| Q2A9D7 Tonoplast intrinsic protein, putative | 1140 | 1e-122 |
| B9MUQ2 Aquaporin, MIP family, TIP subfamily | 1062 | 1e-113 |
| P93706 Root specific | 1051 | 2e-112 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G47450.1 AtTIP2;3; ammonia transporter/ methylammonium transmembrane transporter/ water channel | 1177 | 3e-129 |
| AT4G17340.1 TIP2;2 (TONOPLAST INTRINSIC PROTEIN 2;2); water channel | 1142 | 4e-125 |
| AT3G16240.1 DELTA-TIP; ammonia transporter/ methylammonium transmembrane transporter/ water channel | 955 | 2e-103 |
| AT2G36830.1 GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN); water channel | 796 | 5e-085 |
| AT3G26520.1 TIP2 (TONOPLAST INTRINSIC PROTEIN 2); water channel | 794 | 8e-085 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
