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Information for unigene UN22287
| FASTA Sequence |
| Unigene ID: UN22287 | Length: 1192 |
| SNP | AGGATAACTAATGTATTAGGAAAAGTTTAATTGATAGAATATGATCTCAAGACTCATGCTTGTCTAAAACTCCCAAACAGTAAACA
TAAAAATTTAAAGAACCGGTAAAGATAACATGTTTTAAAGATCAAAGTAGTAGTAGCAGAGGAAAAAGAAAGAATCCAGAACTAGT
AGCCTAAGAACAAATTACAATTTTGCATAGAACTCCCCATTTATCCGATTTGATCTTTGCCATGGACGGTTCGAAGTGCCATCACT
CACTCAGTTCCTTCCTGAACCTTGGCAGGAGATTTTGAAAGAGACCTGGACCTCGATCTCGACATTGCCCTAGGAGGACTCTTCTT
CCTGTCGGGAGATGGAGATCTAGATTTTGATAACGATCTTGAAAGAGAACGTCTGGGTGATTTACTCAGATCCTTTCTTGGGCTCC
TGCTTCTGCTAACGCTACGACTAGGGCTGCGACCACGGCCTCTACTACGGCTCCTGCTTCTGCTTGGGCTTCTAGACTGGGAGCTT
TCATACTTCTTAACCCGGATATAGCCTCTAGCCCAGGGGTTTCTGAACTCTGTATCATCAAGTTTCCTTATCGCATACTTCATGTC
ATCATAATTGGTGTAGTCAACAACACCATAAGTTCCATCACTGTCTCGAGTGACCTCAGCAAAGCACACATCACCAGCTTTCCGCA
TATGATCCTTCAAATCTTGCCATGAAGCAGATGATGGGAGCCCACGTACAATAACTCGGAATTCAGAGTGTCGTGAGACACCAAAC
CGGGCAGATCCTCCACCACCTCCATAGCCACCACCACCCCCACCACGATATCCACCACCGCCACGGCGATCACCTGAAGACTGTCC
TCTACCACCATGGGCAAGCTCAACCCTCAAACGAGAGCCGTCAAAGTTGTACCCGTCACGGCCATCGATAGCATCTTCAGCATCCC
GAGGATGCTCAAACTCAACAAAACAGTAACATGGAGGACGAGGTGGAACCTTCAATTCAATATCCACAATGCGGCCATACTTGTAG
AAGAGATCTTCAATCTCAGACTCCCTTATGTCACCGGGCAAGTTACCAACATAGATGGACCGAGAAAACCGACCACTCATTGTTTG
CAAAGCTTGTTAGGTAACAGGGATAAGCAGCACCGGACAAGATTCGGAGGAACCAAGGCTTTGATAATTAGATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002875964 hypothetical protein ARALYDRAFT_906222 [Arabidopsis lyrata subsp. lyrata] | 1157 | 2e-124 |
| NP_190512 putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana] | 1143 | 9e-123 |
| AAG52185 putative splicing factor; 53460-55514 [Arabidopsis thaliana] | 1143 | 9e-123 |
| NP_001078264 putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana] | 1128 | 5e-121 |
| XP_002318458 predicted protein [Populus trichocarpa] | 1099 | 1e-117 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O22315 Pre-mRNA-splicing factor SF2 | 883 | 6e-094 |
| Q6DII2 Splicing factor, arginine/serine-rich 1 | 652 | 3e-067 |
| Q7SXP4 Splicing factor, arginine/serine-rich 1A | 638 | 1e-065 |
| Q9NEW6 Probable splicing factor, arginine/serine-rich 3 | 621 | 1e-063 |
| Q6NYA0 Splicing factor, arginine/serine-rich 1B | 381 | 9e-036 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A2RVS6 At3g49430 | 1143 | 6e-123 |
| Q9CA06 Putative splicing factor; 53460-55514 | 1143 | 6e-123 |
| A8MR30 Uncharacterized protein At3g49430.2 | 1128 | 3e-121 |
| B9I218 Predicted protein | 1099 | 8e-118 |
| C6TNJ2 Putative uncharacterized protein | 1024 | 4e-109 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G49430.1 SRp34a (Ser/Arg-rich protein 34a); RNA binding / nucleic acid binding / nucleotide binding | 1293 | 1e-142 |
| AT3G49430.2 SRp34a (Ser/Arg-rich protein 34a); RNA binding / nucleic acid binding / nucleotide binding | 1128 | 2e-123 |
| AT1G02840.1 SR1; RNA binding / nucleic acid binding / nucleotide binding | 883 | 5e-095 |
| AT1G02840.3 SR1; RNA binding / nucleic acid binding / nucleotide binding | 883 | 5e-095 |
| AT1G02840.2 SR1; RNA binding / nucleic acid binding / nucleotide binding | 856 | 7e-092 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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