 |
Information for unigene UN22437
| FASTA Sequence |
| Unigene ID: UN22437 | Length: 1786 |
SSR | SNP | GAAGCGCAAACAGTTAAATCATTAACGAAACTCTAATGTAAGGAGACAAAGCACAAAGACCTGTTTAAAAATTGTCGGAGCTGTGA
ATTTATTTTTCAATCGGTGCTGTTTTTAAGCTCTAACTTTCAAAAGCTTCGTTTTGGAGGAAACAAAGAACAAACTCACCTTATAT
AGGTCTTTGGTCAGTTATTGACCTTTATTATGTCTTAAGGACACAATAACGCAGAAAAAAACATATAAATTTGTTTTATGCTCTTT
GCTCCACGTAAGACCCCGAGAGTCCTGAGGTTCCAAGAACGGTAACCTTTCCCCATTCTGAACCAAGCCCGCTGCATCTCATCTTC
AAGTGGATCATCTTTGTTCCCAACTCCATCTCAACCTTCTTCTTCAAGTAAACTTCTTCAGGTCCAAAAGCATCTAGGTAGGTAGT
ATACCTTTGATAAGCAAGACGCAGCGCTTTGGTTATATCTTCAGGTAAGGTCTTCACATTCTCCCCACTCATTCCAATGCTATCAT
CGATCTCCATCTTTAAGGAAGTGAGAATCCCACCAAATTCCTCAACAGCCTCAGCTGCTCTGAACACATTCATCAAGGCCTCTTGC
CCTTCCTTGTCATCTGTGTTTTTCGAGACTGCGTTTTTGGCGTCTTTAACAACAGCAGAAGGTAGCGCTGCCCAATCTGCCGCCAT
CAAATCTCTGAAAGATTTCAGAACATCACTGTCTTTGATTTCAGGCATGTGAGACACATCTTCGCTAAAGCTGCGCACTTGTCCAA
TATCCATTGCTCGAGGATACCGAGAATCGTAAGGAGTTCGATTAGAAGGAAATGAAGAAACAGCGAAGAATCCTCGCGTTGAGAGG
AAACGATGGCGCAACAGCTGACTGGGAGCGGCGGATCTGGATGATCGGAGCGTAGCGACGGAGGCCGCCGCAGCGGTACGGCAGAG
GGATCTCAGAAATGCCATCTTAGATTTTTCGCTCTTCTCAAATCTGCTGTAATGCGAAAGCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCACACACACACACACAATTCTCTATGTATATCACCATCTTCAATCTCAGTTTCTCTCTGTACACAATCACTAACAA
TCTCCGCCTCCGATTTTGGTGTTAATAGATCCGACATATCTAATTATATGTCGTCATTTACCAAAACCGCTTCAGCTTCAAACCCA
TCTTCAAACTCTATTCCTCGTATCCTCTCTTTCCCTAAGTTTCTCTTTTCTTTTCAGTTTCTCCATAGAAGTTGAACATAGTGTTT
CTTATTTCTCAATTTTCTAAACGTTTTGAATTCCTAAATTTTGAATATTTTATTTGTTTGTGTTCATAAAACTGGATTTCATGGAC
CCTCCTCTCTTCCCATTCTCCTTGACGAAGTGAAACCTTTCTCCTCTTCCTGTCGACGAAGTGCAGATGGAGCAAGATCCTATAGC
TCACACGAAAGAGACGGATTGGAGATGGAGGAAGGAAACGAGACGAATGAAGAGGCTGAAGACCAGATCTGGCGGAGAGCAGGACG
ATGGAGGACGTGGCTGACGGCGTGACTGAAGCTTCTATGATGGAGGAGGAGTTAGTGATAGAGGCGACCGGAGTAAGCAAAAAGAG
GAATTAGGGCTCTGTTAGGTTTAACTTTTTTTCTGTTTATTTTTTTGGTTTACATGTAAACCAAATTTGAATTATTTTTATATGTA
AAATATTTTTAATTTATGAATCACGTGTAATTCAATTTTAATTTATAATTGCAATTTCGATATATA
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_564506 succinate dehydrogenase 5 [Arabidopsis thaliana] | 813 | 3e-084 |
| XP_002894050 hypothetical protein ARALYDRAFT_473889 [Arabidopsis lyrata subsp. lyrata] | 800 | 9e-083 |
| XP_002326924 predicted protein [Populus trichocarpa] | 723 | 8e-074 |
| ABK96322 unknown [Populus trichocarpa x Populus deltoides] | 714 | 9e-073 |
| XP_002284591 PREDICTED: hypothetical protein [Vitis vinifera] | 700 | 4e-071 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SX77 Uncharacterized protein At1g47420, mitochondrial | 813 | 1e-085 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A9P908 Predicted protein | 723 | 5e-074 |
| A9PIW9 Putative uncharacterized protein | 714 | 6e-073 |
| A5B894 Putative uncharacterized protein | 700 | 3e-071 |
| B9R7F6 Putative uncharacterized protein | 695 | 1e-070 |
| C6T410 Putative uncharacterized protein | 650 | 2e-065 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G47420.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2); carbonate dehydratase (TAIR:AT1G47260.1); Has 85 Blast hits to 85 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | 814 | 8e-087 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
