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Information for unigene UN22517
| FASTA Sequence |
| Unigene ID: UN22517 | Length: 1534 |
| SNP | GTGAAACTGAAGATTTGAAATTTCGTTCAAGAACAAATATGGCTACTAGTTCAAATTCATAAAGACAAATACTGAACGGTACACAA
CACCATGCCTGGAAAACAAATGACAACTGATTCAAGAAACAGAGTGCTCGCTTATAAAAACATATACTCGATTAGGGTTCTCTCAC
TCTTGCTTGTCACTAGTAGAACATTCTAAACAAAAGTAACTTGATAATGATCCTTGATCAGTAACCATAGCCTGAGCTGTAATCCG
TAGCGTATCCTCCAGGCGGGTTCGTTGGAGCCGCTGCATAAACTGAGCCATGAGTTGCGTAAGGGTTATAGCCTTGCTGCTCTGGT
GCTACAGTTTGCGGCTGTGCTGGTGCTGGCGCTCCAGCTTCAGCCATGAAGTTCTGGATAAGCTGAATAGCGGTTTGGACTTGTGA
GCTAGTTCCGCTAACCTCAACGGTCATTTCACCAGGTACTCCTCTGGTTTCCTGAATGGTTACTGTTGCTCCACTAAGACGTCGAG
TGTAGCTTATGTTTGAACCTGATGTCCCAATCACTGCATCTGCGTAAGACAGTTGAATCTGCAATTGCTGCGTAACTTGCTGAGGG
GCCATGGGTTGGGCGGCTGATACATGCACATTCATAGGAGGCTCCCTTCCATAAGCAGATATACCTTGATGAGGCTGTTTCTCCAT
TTGAGGTTGACGCATCTCAGGAGGAGGATAGTAATTATCATGTCTTGGAGGTGGTTGCTGCATATATGGAGGTGGGTTGTGACCAT
AGCCAGGACCTCCACCACCACTTGGGGCATGGCCTTGAGGTGGACCCCAGGCCTGGTGTGGCGGTGGCATATGATCCATCTGGCGA
GTTGGCTTTTGCATCTGACTTTCAAAGACTGGAATGATGCTACGATCAACCAAAAACTTTCTGAGATGTGATGCAATCAGCTCCAA
GGATTTATGAACGCTTGTTGGTTCCCCCACAACTTCAACCACCCTATCGTCTTGAAGAGCAAAAACAGGTAAATCCTCTGATCCGA
GGACTCTTACTATACAACCAGCTGCTTCTTGAATGGCTTTCACTGTAGCTCCCTGTTTTCCAATCAAACTTCCTGCCTGAGATGCT
GGAACCAGTAATCTTGTGGAAACTTTTGTAGGCGGAGGGGCCTGAGAAGCTTCACCATCCAGACCATCAACTATCCGCATGTGGAC
TCTCAGAAGGCCATCCATAGAAGGAGGTAGAGATGATTCGGGCTCTTCTTTTCCAGAAACCATAACAGCTCTTTCGGTTGTGCCTG
GAGGACCATCTAGAATCTTAATACGAGCCCTTGTCTCCTCAACTATTTTCTTAATGACATCACCTTTGCGACCAATGATGCTACCC
ACTTTCTGTGCAGGAACCTCGTCTCCGTTGTTAGCAACAAAATTCTGCTGATCCTCAGCTTCAGCCATGAGTGGTATCGGTAGAAC
CTTCGATGGGATTAGAGAGCAAACCGGAAACTCAGCTTTGGACGAGGTGCGGCGGAGAAAGAGAGAGTGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_187112 RNA-binding KH domain-containing protein [Arabidopsis thaliana] | 1900 | 2e-210 |
| AAX51268 FLK [Arabidopsis thaliana] | 1900 | 2e-210 |
| XP_002884454 hypothetical protein ARALYDRAFT_477721 [Arabidopsis lyrata subsp. lyrata] | 1883 | 2e-208 |
| XP_002521945 Poly(rC)-binding protein, putative [Ricinus communis] | 1413 | 6e-154 |
| XP_002319087 predicted protein [Populus trichocarpa] | 1410 | 1e-153 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P57721 Poly(rC)-binding protein 3 | 191 | 1e-013 |
| P57722 Poly(rC)-binding protein 3 | 191 | 1e-013 |
| Q15366 Poly(rC)-binding protein 2 | 186 | 5e-013 |
| Q61990 Poly(rC)-binding protein 2 | 186 | 5e-013 |
| Q5E9A3 Poly(rC)-binding protein 1 | 185 | 7e-013 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q58T16 FLK | 1900 | 2e-210 |
| Q9SR13 AT3g04610/F7O18_9 | 1900 | 2e-210 |
| B9S7H6 Poly(RC)-binding protein, putative | 1413 | 4e-154 |
| B9I5K8 Predicted protein | 1410 | 1e-153 |
| A5ASG9 Putative uncharacterized protein | 1252 | 2e-135 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G04610.1 FLK (flowering locus KH domain); RNA binding / nucleic acid binding | 1901 | 6e-213 |
| AT4G26000.1 PEP (PEPPER); RNA binding / nucleic acid binding | 448 | 2e-044 |
| AT1G51580.1 KH domain-containing protein | 327 | 2e-030 |
| AT5G15270.2 KH domain-containing protein | 266 | 2e-023 |
| AT5G15270.1 KH domain-containing protein | 266 | 2e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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