 |
Information for unigene UN22540
FASTA Sequence |
Unigene ID: UN22540 | Length: 1249 |
SSR | SNP | GAGAGACGATAGAAACTGTATTTGGATAACACGCCACACGACATGAGTCTTATGGAATATTCAAAGTGCATGCAAACGAGAGAAGG
GATTCAAATCTTATATTATAAAATGATGATAAACTGTAGTCTCGCCTCGCCACCAGCAAAAGTTTGGTTGACTATATATATACCCA
AGACATCCAGAGAGAGAGAGTTTGCAGCTCAGAGAATAGTGCAGCATGAATTCGTTTTCTTTGCTTGCTTGTAGAACATCTGGGAT
GCCATGCTCAAATCAGAGCTTTTCTCGACTAGGCTGTCCAGCTTCTCACCACGGGCTAGAACGCTATCAATGGTCTTAAGGATAAT
CTTGGTCTCATCCAACTCCCTCTGGATTTTCAACAGCTTATCAGCCTCTGCTGGGTCCTGGAATTTGGTAAGAGCTTCGGCTAAGT
AAGGCCAGGGCTGAGAGGAGTCTTCTTTAGCAGACCTCCATGTCTCACCAAAACTCTTCTGGTACTCATCTATCACCTGACAAGCC
ATCAACACAACACACAGAGAAACCAAGAAAAATCCTCAAATTCTCTAAAAAAAACAAAAGAAATGGCTTCCACAGCTCTCTCAAGC
GCCGTCGTCGGAACTTCCTTCCTCCGCCGTCAAACATCTCCCATCAGCCTCCGTTCCCTCCCCTTAGCCAACACCCAGACCCTCTT
CGGTCTCAAGTCAGGAACCGCACGTGGTGGACGCGTCACAGCCATGGCCACATACAAGGTCAAGTTCGTCACTCCAGAAGGAGAGC
AAGTGGTTGAGTGCGACGACGACGTTTACGTCCTCGACGCTGCTGAGGAGGCCGGGCTCGACTTGCCTTACTCTTGCCGTGCCGGT
TCTTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTCCGTTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGA
AGGGTTTGTCCTGACTTGTGCGGCTTATCCTACTTCTGATGTTACCATTGAGACCCACAAAGAAGAAGACATGGTTTAAGACAAAA
GCTCCGTAACATGCTGCTTTTGATGGTTTCGTAATCATTCATGTCTTTACATTTTGAGTTGAGTTTGTTGTTTACTTTAGTATAAT
CTATTGTTGTCTGCTGTAATTGTTCTTGGTTTTGAACATCTTTTGGTGAGATCAATGGATAACTGTTTTAAACTTATGGTAATGCA
TGTTATGAATAAAGTTTGATGAGAATCTAAACGTTATCTTTGAGC
|
|
|
GenBank top hits (Blast detail) | Score | e value |
BAJ33728 unnamed protein product [Thellungiella halophila] | 699 | 3e-071 |
XP_002888117 fed A [Arabidopsis lyrata subsp. lyrata] | 695 | 9e-071 |
NP_176291 ferredoxin-2 [Arabidopsis thaliana] | 693 | 2e-070 |
NP_172565 ferredoxin [Arabidopsis thaliana] | 665 | 3e-067 |
XP_002889843 hypothetical protein ARALYDRAFT_471234 [Arabidopsis lyrata subsp. lyrata] | 663 | 5e-067 |
Swiss-Prot top hits (Blast detail) | Score | e value |
P16972 Ferredoxin-2, chloroplastic | 693 | 6e-072 |
O04090 Ferredoxin-1, chloroplastic | 665 | 1e-068 |
P14938 Ferredoxin, leaf L-A | 489 | 3e-048 |
O04683 Ferredoxin-1, chloroplastic | 487 | 5e-048 |
P00227 Ferredoxin | 476 | 9e-047 |
TrEMBL top hits (Blast detail) | Score | e value |
C0PRC9 Putative uncharacterized protein | 495 | 9e-048 |
A9NTB7 Putative uncharacterized protein | 492 | 2e-047 |
B8LN33 Putative uncharacterized protein | 487 | 8e-047 |
B9SXF4 Ferredoxin-2, chloroplast, putative | 486 | 1e-046 |
Q6Q8B8 Chloroplast ferredoxin I | 474 | 3e-045 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT1G60950.1 FED A; 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding | 694 | 4e-073 |
AT1G10960.1 ATFD1 (FERREDOXIN 1); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding | 666 | 8e-070 |
AT5G58060.1 YKT61 | 488 | 3e-049 |
AT5G58060.2 YKT61 | 488 | 3e-049 |
AT5G58180.1 ATYKT62 | 416 | 7e-041 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|