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Information for unigene UN22540

FASTA Sequence
Unigene ID: UN22540Length: 1249 SSRSNP
GAGAGACGATAGAAACTGTATTTGGATAACACGCCACACGACATGAGTCTTATGGAATATTCAAAGTGCATGCAAACGAGAGAAGG
GATTCAAATCTTATATTATAAAATGATGATAAACTGTAGTCTCGCCTCGCCACCAGCAAAAGTTTGGTTGACTATATATATACCCA
AGACATCCAGAGAGAGAGAGTTTGCAGCTCAGAGAATAGTGCAGCATGAATTCGTTTTCTTTGCTTGCTTGTAGAACATCTGGGAT
GCCATGCTCAAATCAGAGCTTTTCTCGACTAGGCTGTCCAGCTTCTCACCACGGGCTAGAACGCTATCAATGGTCTTAAGGATAAT
CTTGGTCTCATCCAACTCCCTCTGGATTTTCAACAGCTTATCAGCCTCTGCTGGGTCCTGGAATTTGGTAAGAGCTTCGGCTAAGT
AAGGCCAGGGCTGAGAGGAGTCTTCTTTAGCAGACCTCCATGTCTCACCAAAACTCTTCTGGTACTCATCTATCACCTGACAAGCC
ATCAACACAACACACAGAGAAACCAAGAAAAATCCTCAAATTCTCTAAAAAAAACAAAAGAAATGGCTTCCACAGCTCTCTCAAGC
GCCGTCGTCGGAACTTCCTTCCTCCGCCGTCAAACATCTCCCATCAGCCTCCGTTCCCTCCCCTTAGCCAACACCCAGACCCTCTT
CGGTCTCAAGTCAGGAACCGCACGTGGTGGACGCGTCACAGCCATGGCCACATACAAGGTCAAGTTCGTCACTCCAGAAGGAGAGC
AAGTGGTTGAGTGCGACGACGACGTTTACGTCCTCGACGCTGCTGAGGAGGCCGGGCTCGACTTGCCTTACTCTTGCCGTGCCGGT
TCTTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTCCGTTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGA
AGGGTTTGTCCTGACTTGTGCGGCTTATCCTACTTCTGATGTTACCATTGAGACCCACAAAGAAGAAGACATGGTTTAAGACAAAA
GCTCCGTAACATGCTGCTTTTGATGGTTTCGTAATCATTCATGTCTTTACATTTTGAGTTGAGTTTGTTGTTTACTTTAGTATAAT
CTATTGTTGTCTGCTGTAATTGTTCTTGGTTTTGAACATCTTTTGGTGAGATCAATGGATAACTGTTTTAAACTTATGGTAATGCA
TGTTATGAATAAAGTTTGATGAGAATCTAAACGTTATCTTTGAGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33728 unnamed protein product [Thellungiella halophila]6993e-071
XP_002888117 fed A [Arabidopsis lyrata subsp. lyrata]6959e-071
NP_176291 ferredoxin-2 [Arabidopsis thaliana]6932e-070
NP_172565 ferredoxin [Arabidopsis thaliana]6653e-067
XP_002889843 hypothetical protein ARALYDRAFT_471234 [Arabidopsis lyrata subsp. lyrata]6635e-067

Swiss-Prot top hits (Blast detail)Scoree value
P16972 Ferredoxin-2, chloroplastic6936e-072
O04090 Ferredoxin-1, chloroplastic6651e-068
P14938 Ferredoxin, leaf L-A4893e-048
O04683 Ferredoxin-1, chloroplastic4875e-048
P00227 Ferredoxin4769e-047

TrEMBL top hits (Blast detail)Scoree value
C0PRC9 Putative uncharacterized protein4959e-048
A9NTB7 Putative uncharacterized protein4922e-047
B8LN33 Putative uncharacterized protein4878e-047
B9SXF4 Ferredoxin-2, chloroplast, putative4861e-046
Q6Q8B8 Chloroplast ferredoxin I4743e-045

Arabidopsis top hits (Blast detail)Scoree value
AT1G60950.1 FED A; 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding6944e-073
AT1G10960.1 ATFD1 (FERREDOXIN 1); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding6668e-070
AT5G58060.1 YKT614883e-049
AT5G58060.2 YKT614883e-049
AT5G58180.1 ATYKT624167e-041

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
124  15%
 
711  42%
 
93  12%
 
111  4%
 
84  15%
 
62  8%
 
101  4%

Unigene MembersMember information