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Information for unigene UN22547

FASTA Sequence
Unigene ID: UN22547Length: 3953  SNP
CGGCACGAGGATTTGTTATTTCGCCAATTTATAGTTCCCTTTTTTCTGCGCTTGCTTTCCTTATTTTAGTATCTAGTCAAATTTTT
CCATTCTAATTACAAAAAAACTCTTGATTATTGATACATTCTATCAATTTCAATTGGTCACTAACGACAGAGTTACATTACACCCC
CTCCCATTTTTCAATACAAATTTGTATTGAAAAATAAAGAAAAGGGGATAAAATGAATTCGTCTTAATATACATACTAGGATTAGG
ACTATCAGACAAGTAATTCCTGACACCTGGTCGAAAAGGAATCGAAAGTCTAAAGAGAGACAAAAAGGCTTTTGATAATTTTTTTG
GTTCTTTCTTTTTTACGAATTTGATAAAGCTAAATAGACAGATCTAAAAATTCATTTCGGATAATTGAACCTTCTCAAACTGTTTC
TTTTTAAGAACCAAAAAGATTTGTGCCAAAACAACCGATCCTAAGAAGAACAAAAGGCCTTGGACACGTAATGGATCTTGAAGTAC
TATTTCCGCATCCCCCTGACCAAATCCACCCACATTAGGATTGCTCGTTAATGGTTGATCGAGTTTAATGGATTCGCCCTCTGAAA
CAAGAAGTTCTAGGCCTCGAGGGATAATATCAATTACTTGGCGTTCATTCGATGCATCCACTACGGTTATTTCGTATCCACCTTTT
TCTTTTCGTAAAATTTTGCTTATTATCCCTCCTGCCGTAGCATTATAAACTGTATTGTTACTTTTGCTACCATCAGGATAAATCTG
ACCCCTTCCCCTATTTCCACCTACGTATATAGGATATTTTAAGAAGTGAACATCTTTATTAGTAGCAGGGTCTGGGGCAAGAATAG
GAAAGGTTATTTCACTATATTTTTGACCAGGAACAGGACCTATCACAAGAATATTTTTTTTATTGGGGCGATAATTCTGAAAAGAC
AGATTTCCTATCTTTTCTTTGATCTCGGGTGAAATACGATCGGGGGGGGCTAATTCAAACCCCTCAGGTAAAATAAGAACAGCTCC
CACATTCAAAGCTCCTTTTTTACCATTAGCTAGAACTTGTTTTAGCTGCATATCATAAGGAATTTTAACAACTGCTTCAAATACAG
TATCAGGAAGTACCGCTTGTGGAACCTCAATATCCACGGGCTTACTAGCTAAATGGCAATTGGCACATACAATACGCCCAGTTGCC
TCTCGTGGATTTTCATAATTCTGCTGGGCAAAAATTGGATATGCACTTGAAATGGATGCCCAAGTTATTATATATATCATGAGTGA
GACAGATATGGAGCGAGTAATCTCTTCCCTTATCCAAGAAAAGGTATTTCTAGTTTGCATGGTCCAATCATTTATCCCGAAAATTT
CTACAATAAAGTTAGGTAGGTCGATAATATACTTCCCTAGCCACAATTCTGCTATTTACATTTACTGAAAAAAAAATTTTTTTTTA
TTGAAATATACAAGGAATCCCTCGTGGGTAAAAAAGAGTAAAGTAAATACGACTTTGATTTGGTTATGATGTATAAAGTAAGAAAG
AGTAGAATTGGATCAGTGAATCGTTTTTTAGTCATTTATTGCATGATAAATCACTACAAGTGACGGAGATACACGATTTAAATAAC
GAAAGATCCAATATTTAAAAATTGTATCAAGAATGACTGGAAAGGTAGAAACTAGACCAGATAAAATTTGTTCATAATGAGCAAAC
CCAAAATCTTTGTAAATATAACCAATCATTAGTTCCCAACCGTGAGGCGAATGGAATCCGATACATAAATCAGTTAATAAAAGAAT
CGAAAAAGCTTTAATTGTATCACTTAAATTATATAGGAATTCTTGAACCCAAGAATTGAGAATAAAAAGCTTTTCCTTACCCCAAA
AGGAATAACCACTTAGAATAACGAAAGATATTAGATTTGTCGAGAAGTGCAAGATTGTATGGATACGATACTCGTTGTGTATCTTG
ATGAATTGGATCGTTTCTTTGTGGATTCCTAGACGAAATTGTTGTAAATCGGTTTCTGGGTATTCCTTTATCATTTCATCCAGCTG
GAATAGTTCCTCTAATTGTATGAATTTTTCTAGAACACTTTTTTCTTGAATATCATTCAAGAAAGTTTCGCATTGTCTAGTATTCC
ACCAATTAGTAATCCAAGTTTTCAAATTTTTATTACAGCAGAGAGAGATCAACCAGGGCAAAAAGACTATAGATGTAAAATAAAAA
AAAGGAATGAATGCTTTCTTTTTTGCCATTTTGAATCTGTGAATTGTTAATGAACCTACCGCATTTGTTGATTCTATTAGATCTAC
TATTTCTATCGAGCATGAGTTTCTATTCTAATTCAAATAGAATGTATTGAGCCTATAATCCCTTTTATCTTTTTCTTTTGATTCAA
TACTTAGTCTTTGCTTTGAATCTAGAAAGAATACAGAAATAGACTCAGAATACACTTCCAATTTGAATCAAGAAAAAATTGTATTT
CCAGGATGTTATTCCCCCTTTTTTCGATCACTACTAAAAGAACTTTTTTTAATTTTTAAAATAAAAAATATGATTCTATTTTCGAG
ACGAATAAACTCCCTTTCTTTTCTATCAAATATATAAAAAAAACGAGCATAAAAGAATAGATGAATGTTCAATTGAAAAAAAAAAG
AAAGCAATTCTTTCGTTTTTTCTTCCTACTGCCAAAGGATTTAGTCTTTAAACTTTAAAGAATTCATTTCAAAATACTTCAATTGG
TACACGCAAGAAGTAAGCCAATTCAGCAGCTTTTTGCTCAATTTCTCGTGTAGTAAAATTCTCATCAGTACGAATTAAAGGAATAG
CCCCTTGACCTCGAATTTCCATATAAAGGACACGCCGGGCAGAAACACCCTCTTTAACTTCGATTCTGATCGACTGAATATCTTTC
ATAAGGAATCGTAAAAAGATGCGACGGCTTTTTCCAGGAAATCCCCAACGAAAAATACGTACTATCCCTTCTTTTCGGTCGAAAAG
ATCATAACCACTACCCACATTCCACAAAATAGTGCACCACAAATAGCAACTAATAAAGAGACCCGCGATCCCATAGAAAGACATCA
CAATCCCTTGTGGAAAAAAAATGATTTCCTGAGACGCAACTAACGATATAAAATTTCTACCAAGATAACTGGAAGTTCCAACCAAT
AAGAATCCCAATGAACCTAAAAATAGGATAAAGGCCCAGCAGAAATTACTTGTTTTTCGAGACCCCGTTATAAATTCTATCCATAG
AGATTCTGATCGCCAACTCATATATATTAGATCCAGTTATACAATTTTTTGGAATTGAGAAAATATGACTTTCCTTTTTTTGTTTT
CAAAGTAACTCTCATCAACTATAACTATTTTATTGTGAACCTTTACTTTAGGAGTAATTTATATAATTGTTTATATCTAAAATAAT
AACATCTCCTTCCTTTATATGATCCCCTATAACTATATACATACAAATAAATACATTGATAACTATATACATACAATTAAATACAT
TGACTTGAATTTCATACAGCGGTCCAATGATGATCCATTTTTTCAAAAGAGCGCAAATTGAGTTACCCCATATAATACGTTTACAC
ATGCATAAAAGCTTTTTTTAGTTATGTTTGTAGGAATCTATGTGTTATAAATATTCTACCAAATGGGTCTTATCAAATCGAAGTTT
TTAAAATAAAAAAGGGATTTATACGATTCGGTCTCATCCGATCTAAAAAATCTTATTTTTTTGAATATGAAGAAATAAAGAAGCCA
TTGCAAGTGCCGGAAAGACTAGGCCTACTAAAGGCACAAAAATAGAGGGTAAGTTGTTGAAAGTTGTCATAAAATGGGGTACCTCA
ATTTAATATTTGTACCTGTTATTGTTATATTCTGAATTCTAAAGATATCTTAGAATATCTTGTATTTTTATTATTTCTACTAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
P36438 RecName: Full=Apocytochrome f; Flags: Precursor16328e-179
YP_001123650 cytochrome f [Lepidium virginicum]16255e-178
YP_001123738 cytochrome f [Lobularia maritima]16239e-178
YP_001123827 cytochrome f [Nasturtium officinale]16202e-177
YP_001123212 cytochrome f [Arabis hirsuta]16193e-177

Swiss-Prot top hits (Blast detail)Scoree value
P36438 Apocytochrome f16323e-180
A4QLB9 Apocytochrome f16252e-179
A4QLK7 Apocytochrome f16234e-179
A4QLU6 Apocytochrome f16208e-179
A4QK31 Apocytochrome f16191e-178

TrEMBL top hits (Blast detail)Scoree value
D1L8Q1 Cytochrome f16325e-179
C0LE87 PetA15286e-167
C5MTM3 Cytochrome f15251e-166
B6VJU2 Cytochrome f15232e-166
D3WFB5 Cytochrome f protein15214e-166

Arabidopsis top hits (Blast detail)Scoree value
ATCG00540.1 Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; encoded by the chloroplast genome and is transcriptionally repressed by a nuclear gene HCF2.16126e-179
ATCG00530.1 hypothetical protein12075e-132
ATCG00520.1 Encodes a protein required for photosystem I assembly and stability. In cyanobacteria, loss of function mutation in this gene increases PSII/PSI ratio without any influence on photoautotrophic growth.9324e-100
ATCG00510.1 Encodes subunit I of photosystem I.1852e-013

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
184  3%
 
1013  10%
 
1122  16%
 
721  16%
 
919  14%
 
129  7%
 
820  15%
 
625  19%
 
41  1%
 
191  1%

Unigene MembersMember information