RadishBase

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Information for unigene UN22703

FASTA Sequence

Unigene ID: UN22703	Length: 953		SNP
GGATTGAAGTCGTGGGGTTCAATCAATGTTCACAGCACTTAATCGACACGCCTAACCGTAACCTCCTTTTTTCATAGAAAAGCGTT TTCCTGGGAAAAACTTCACGAATCAATCGGGGAACTCACCAAGAGCTCGAGAAAACCATGAGCAACGAGTACGATTATCTGTTCAA GCTTCTGTTGATCGGTGACTCATCTGTTGGAAAATCATGCCTGCTTCTTCGATTCGCTGATGATGCGTACATTGACAGTTACATAA GCACCATTGGTGTTGACTTCAAAATTAGGACGATTGAGCAGGATGGGAAGACGATTAAGCTCCAAATCTGGGATACTGCTGGGCAG GAGCGTTTCAGGACCATCACTAGCAGCTACTACAGAGGAGCTCATGGAATCATCATTGTGTATGATTGTACTGAGATGGAAAGCTT CAATAACGTGAAGCAGTGGTTGAGTGAGATCGACAGATATGCTAATGACAGTGTATGCAAGCTTCTTATTGGTAACAAGAATGATA TGGTTGAAAGTAAAGTTGTTTCCACCGAAACTGGAAAGGCCTTAGCAGACGAGCTCGGAATACCCTTTCTGGAGACCAGTGCTAAG GATTCTATCAACGTCGAACAGGCATTCTTAACTATTGCTGGCGAGATCAAGAAGAAAATGGGAAGCCAGACGAATGCAAACAAGAC ATCTGGAAGTGGAACTGTCCAAATGAAAGGTCAGCCAATCCAACAAAACAATGGTGGCGGTTGCTGCGGTCAGTAGTTAAGCAAAC TGTTACCAAAACTATCTGTTCTTTTCTTACTATGTGTGTTGTGAAAACTAATGGCTGTCTAAAACAATAACACTGGAAACTTTAGT ATTTCATGTCACTCTGTGTTACAAATGATCTATGGTGTTAGTTGCAATGTCCTCGTGTACATCTTCAGTTTTTATTATAGCATTCG AGTTTCG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAB04618 ypt-related protein [Brassica rapa subsp. campestris]	1053	2e-112
NP_187779 Ras-related protein RABD1 [Arabidopsis thaliana]	1028	1e-109
XP_002884861 hypothetical protein ARALYDRAFT_478519 [Arabidopsis lyrata subsp. lyrata]	1028	1e-109
XP_002526430 protein with unknown function [Ricinus communis]	904	3e-095
XP_002328790 predicted protein [Populus trichocarpa]	903	4e-095

Swiss-Prot top hits (Blast detail)	Score	e value
Q9ZRE2 Ras-related protein RABD1	1028	6e-111
P40392 Ras-related protein RIC1	799	2e-084
P28188 Ras-related protein RABD2A	776	1e-081
Q05737 GTP-binding protein YPTM2	773	2e-081
P16976 GTP-binding protein YPTM1	772	3e-081

TrEMBL top hits (Blast detail)	Score	e value
Q39274 Ypt-related protein	1053	1e-112
B9SKB1 Putative uncharacterized protein	904	2e-095
B9N0F8 Predicted protein	903	3e-095
A9PFI0 Predicted protein	891	7e-094
Q9ZRH6 Rab1-like small GTP-binding protein	890	1e-093

Arabidopsis top hits (Blast detail)	Score	e value
AT3G11730.1 ATFP8; GTP binding / GTP-dependent protein binding / myosin XI tail binding	1033	1e-112
AT1G02130.1 ARA-5 (ARABIDOPSIS RAS 5); GTP binding	781	2e-083
AT5G47200.1 ATRAB1A; GTP binding	774	2e-082
AT4G17530.1 ATRAB1C; GTP binding	768	8e-082
AT3G09900.1 ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E); GTP binding	603	1e-062

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	2			8%


12	10			42%


8	2			8%


6	6			25%


9	2			8%


11	2			8%

Unigene Members	Member information