RadishBase

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Information for unigene UN22747

FASTA Sequence

Unigene ID: UN22747	Length: 1333		SNP
GGAAGCCACTAAAAAAATGGGAACAACAAAAAGCTTCTGTCTCTACGAAGCTTCACCATCTTTTGTGGCGTAGAAAAGCAGTTTGA GTGATTAAACTTTTTACGTCCACTTGAAAGTTTTTTTATTTTCTTTATTTTTATTTTTTTGGATTTTATCTGATCACTCGTTTGTG TCTCTGAATCTATCCCTTGCATCCGCATCTCGATTCGTTTTTTTTCCCTTTTAAATATATTTTATTTTATTTTAAGGAGAAGATTT CTGTATTCTGAGATCCATTCGATATCGATTGCCCTCTCTCTAGTCAATCCCTGATGGCGGATGCAGCGAAAGATTTAGCTTCAGGG ACTGTCGGAGGAGCGGCTCAGCTCATTGTTGGTCACCCTTTCGACACCATCAAGGTCAAACTTCAGAGCCAACCTGCTCCAGCACC TGGACAGCAACCCATGTACACGGGCGCAATCGATGCGGTTAAAAAGACCGTTGCTGCTGAAGGACCTAAAGGTTTGTACAAAGGTA TGGGAGCTCCTCTTGCAACCGTTGCTGCCTTCAACGCGGTTCTGTTCACCGTGAGAGGTCAGATGGAAGGGATGTTTAGGTCTGAA CCTGGTGTTCCTTTGACCATTAGTCAACAGTTTGTGTGCGGTGCGGGTGCTGGTTTCGCTGTCTCGTTCCTTGCTTGTCCTACCGA GTTGATCAAATGCAGGTTGCAAGCACAAGGTGCATTAGCTGGTGCCTCTACCACAGGCTCAGTGGTTGCAGCCGTGAAATACGGTG GACCAATGGATGTAGCACGTCATGTGCTACGATCAGAAGGTGGAGCTCGAGGTCTATTCAAAGGTTTATTCCCTACATTTGCCCGT GAAGTTCCCGGGAACGCGACAATGTTTGCAGCCTACGAAGGTTTCAAGAGGTTTTTAGCCGGTGGTTCAGACACTTCGAGCTTAGG ACAAGGGTCATTGATCATGGCTGGTGGTGTCGCTGGTGCATCCTATTGGGGGTTTGTGTACCCAACCGATGTTGTGAAGAGTGTTC TTCAAGTTGATGATTATAGAAACCCTAAGTATGCGGGTTCGATGGATGCTTTTAGGAAGATTTTGAAAGCTGAAGGAGTTAAAGGT TTGTATAAAGGGTTTGGTCCAGCCATGGCTAGGAGTGTCCCTGCTAATGCTGCTTGCTTCTTGGCTTATGAGATGACAAGGTCTAG CTTGGGATAAACCGGTTTGGTTTGGGTTTTAACTGTTGGTTCGATTTGTTGTTGTTCTATTTGGTTAACCTTTCGGCTATTAAATG ATTCTTTTTAATTTTAAGAAAAAAATCATCATCTTTTTACACC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_568670 mitochondrial carnitine/acylcarnitine carrier-like protein [Arabidopsis thaliana]	1435	1e-156
XP_002863387 hypothetical protein ARALYDRAFT_494297 [Arabidopsis lyrata subsp. lyrata]	1425	2e-155
BAB08924 carnitine/acylcarnitine translocase-like protein [Arabidopsis thaliana]	1390	2e-151
ACU20076 unknown [Glycine max]	1240	6e-134
XP_002280380 PREDICTED: similar to mitochondrial carrier protein isoform 1 [Vitis vinifera]	1230	9e-133

Swiss-Prot top hits (Blast detail)	Score	e value
Q93XM7 Mitochondrial carnitine/acylcarnitine carrier-like protein	1435	6e-158
Q27257 Protein dif-1	551	2e-055
Q9Y619 Mitochondrial ornithine transporter 1	438	3e-042
Q9WVD5 Mitochondrial ornithine transporter 1	431	2e-041
Q9BXI2 Mitochondrial ornithine transporter 2	426	6e-041

TrEMBL top hits (Blast detail)	Score	e value
C6TE24 Putative uncharacterized protein	1240	4e-134
B9N2N2 Predicted protein	1235	2e-133
C6TFK7 Putative uncharacterized protein	1225	2e-132
C6TA29 Putative uncharacterized protein	1224	3e-132
B9S1F6 Protein dif-1, putative	1222	5e-132

Arabidopsis top hits (Blast detail)	Score	e value
AT5G46800.1 BOU (A BOUT DE SOUFFLE); binding / transporter	1436	4e-159
AT2G33820.1 MBAC1; L-histidine transmembrane transporter/ L-lysine transmembrane transporter/ L-ornithine transmembrane transporter/ arginine transmembrane transporter/ binding	396	2e-038
AT3G54110.1 PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1); binding / oxidative phosphorylation uncoupler	182	1e-013
AT3G53940.1 mitochondrial substrate carrier family protein	164	1e-011
AT5G66380.1 ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1); binding / folic acid transporter	153	3e-010

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	4			12%


8	6			18%


6	11			33%


11	8			24%


12	2			6%


7	2			6%

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