RadishBase

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Information for unigene UN22785

FASTA Sequence

Unigene ID: UN22785	Length: 1597	SSR
GGACTCTCATCTTGCCATTTAGTTGTGCAAAGCTAAGAAAGAAAATAATGGCCAAAAGGGTGGGACCAGTGGGTAACTACTTGGGA AATGCATTCGACGATGGTGTTTTCGATGGTGTAAAGAAAATAATTGTCTCAGTACAGGGAAGTCCTTATAACTGTATAACAATGAT CAAGATCGAATATGAAAAGGACGGGAAACTTGAATCCCGTCAACATGGAACGGTTCTTGGGGAACTAAAAGAGTTTGTAGTGGATC ATCCGAATGAATATATAACATCTGTTGGTGGGAGCTATGATATTGTTCAAACATACTATCATACACTCCTGATCAAATCGCTAATC TTTAAAACCAACACTGGAAGAGCATCTCCAGTACTCGGTGGGACAACAGAATCTGGACAACCAGCTGGGACAGAATTCACCTTGGA GGGTCAATATGGAGAAAAGTTTCTTGGGTTCTTTGGACGTTCTGGTCAAGCTCTTGATGCCATTGGAGCTTACTTGGGACCTCTGG GTGGTAACAAGGGAAACAAATTCGATGATGGTATTCTCGATGGTGTGAAAAAAGTAACTGTTGCGGCAGATCAGTATAGTGTAACT TATATCAAGATCGAATACGAAGACAATGGAAAAGTTGAAGTCCGTGAACATGGGACAAACCGGGGGGAGCTAAAAGAGTTTTCGGT GAACTATCCAGAAGACACTATTGTAGCCGTTGGTGGAAGCTACAATCATATTTTCACCTATGATACAACGCTTATTACATCTTTGT ACTTCACAACCTCCAAGGGTTATACCTCCCCACTATTTGGTGTGGCCAAGGGAAACGAGTTCGAGCTCAAAGGTGAAAATGGAGAA AAGCTTCGTGGATTTTATGGACGTGGTGGTACTGCCATCGATGCCATTGGGGCTCACTTTGGACCGCTTGGTGGTAACAAGGGAAA CACATTCGACGATGGTGTTTTCGATGGTGTGAAAAAGTTAACCGTTGGAGCAGATGAGGTCAGTGTAACTTATATCAAGATCGAAT ACCAAAAGGATGGAAACGTCATAGTCCGTGAACATGGGACGTTTAACGGGATTCTAAAAGAGTTCTCGGTGAACTATCCGGAAGAC AATATTGTGGCTGTTGGTGGAAGCTACAATCATATTTTCAAATATGATACAACGCTTATCACATCATTGTACTTCACAACCTCTAA GGGATTTACCTCTCCATTATTTGGTGAGAAAAAGGGCAAAGACTTCGAACTCAAAGGTGAAAATGGAGGAAAGCTTCTTGGACTTT ATGGACGTGATGGTACTGCCATCGATGCCATTGGGGCTCACTTCGAGACTGGTTCTGGTTAAAAGATCGCCGAGTTCCACTAAAGA GCTGGTGTTTAGTTTCATCAGATCCGAGTCCATTATCGCCAATTACAGGCTTGCCATTTAAATCCTTTTTCTTTGATTACATAAAA ATATAAAATAAGCCCATCTTTCTTTTGGTTGTTCAAAAAAAAATAATAATAAATAAGGCCACCCAAAGTCTGCTTTTACCATGTAT GTGTTTGTGTGTGTGTGTGTGTGTGTTTAATAAAAATGTGAAATTTGGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAQ01572 putative myrosinase-binding protein 3 [Brassica rapa subsp. pekinensis]	841	1e-087
AAC08048 myrosinase-binding protein [Brassica napus]	614	3e-061
AAC08050 myrosinase-binding protein [Brassica napus]	601	1e-059
CAA72270 jasmonate inducible protein [Brassica napus]	585	7e-058
CAA70587 myrosinase binding protein [Brassica napus]	581	2e-057

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SAV1 Myrosinase-binding protein-like At1g52030	519	1e-051
O80998 Myrosinase-binding protein-like At2g25980	334	4e-030
Q9SAV0 Myrosinase-binding protein-like At1g52040	304	1e-026
O80950 Myrosinase-binding protein-like At2g39310	304	1e-026
O80948 Myrosinase-binding protein-like At2g39330	283	3e-024

TrEMBL top hits (Blast detail)	Score	e value
Q7XAX0 Putative myrosinase-binding protein 3 (Fragment)	841	1e-087
Q96340 Myrosinase-binding protein	614	2e-061
Q96342 Myrosinase-binding protein (Fragment)	601	7e-060
P93659 Jasmonate inducible protein	585	5e-058
P93065 Myrosinase binding protein	581	1e-057

Arabidopsis top hits (Blast detail)	Score	e value
AT1G52030.2 MBP2 (MYROSINASE-BINDING PROTEIN 2); sugar binding / thioglucosidase binding	519	1e-052
AT1G52030.1 MBP2 (MYROSINASE-BINDING PROTEIN 2); sugar binding / thioglucosidase binding	519	1e-052
AT1G52070.1 jacalin lectin family protein	401	6e-039
AT1G52050.1 jacalin lectin family protein	386	3e-037
AT1G52100.1 jacalin lectin family protein	311	2e-028

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	8			40%


9	3			15%


12	5			25%


10	2			10%


6	1			5%


18	1			5%

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