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Information for unigene UN22888

FASTA Sequence
Unigene ID: UN22888Length: 1708 SSR 
GGACCAACATCTATCCATCTTCTCCGATCAGAATCTCTCTCTCTCTCTTCTCAGCTTCTTGTGTGACTTACACTTGTGAGAAATGG
CCACCGCAGTTTCCACCGTGGGTGCCATCAACAGAACTCCGTTGAGCTTGAACGGGTCAGGAGCAGGAGCTGCTTCAGTCCCATCT
ACCACCTTCTTGGGAAAGAAAGTTGTAACCGCGTCGAGATTCACACAGAGCAACAACAAGAAGAGCAACGGATCATTCAAAGTGGT
TGCTGTGAAAGAAGACAAACAGACCGATGGAGACAGATGGAGGGGACTTGCCTACGACGTGTCTGATGATCAACAAGACATCACCA
GAGGCAAAGGTATGGTAGACTCTGTCTTCCAAGCTCCTATGGGAACCGGAACTCACAATGCCGTTCTTAGCTCCTATGAGTACATT
AGCCAAGGTCTTAAGCAGTACAACTTGGACAACATGATGGATGGGCTTTACATTGCTCCTGCTTTCATGGACAAGCTTGTTGTTCA
CATCACCAAGAACTTTTTGACCTTGCCTAACATCAAGGTTCCACTTATTTTGGGTATTTGGGGAGGCAAAGGTCAAGGTAAATCCT
TCCAGTGTGAGCTTGTCATGGCCAAGATGGGCATCAACCCAATCATGATGAGTGCTGGAGAGCTTGAGAGTGGAAACGCAGGAGAA
CCAGCTAAGCTGATCCGTCAAAGGTACCGTGAGGCAGCAGACCTTATCAAGAAAGGAAAGATGTGTTGTCTGTTCATCAACGATCT
CGACGCCGGTGCTGGTCGTATGGGTGGTACCACTCAGTACACTGTCAACAACCAGATGGTTAACGCAACCCTCATGAACATTGCTG
ATAACCCAACAAACGTCCAGCTCCCAGGAATGTACAACAAGGAAGAAAACGCACGTGTCCCCATCATCGTCACAGGTAACGATTTC
TCCACTCTCTATGCTCCTCTCATCCGTGATGGACGTATGGAGAAGTTCTACTGGGCCCCGACACGTGAAGACCGTATTGGTGTCTG
CAAGGGTATCTTCAGGACTGACAATGTCCCGGACGAAGACGTTGTCACGCTTGTTGACAAGTTCCCTGGACAATCTATCGATTTCT
TTGGTGCATTGAGGGCTAGAGTGTACGATGATGAAGTGAGGAAGTTCGTTGAGGGACTTGGAGTGGAGAAGATAAGCAAGAGGCTG
GTGAACTCAAGGGAAGCTCCTCCGGTGTTTGAGCAACCGAAGATGACTCTTGAGAAGCTTATGGAGTATGGAAACATGCTTGTGAT
GGAGCAAGAGAACGTCAAGAGAGTCCAACTTGCTGACCAATACCTTAACGAGGCTGCGTTGGGAGACGCAAACGCTGACGCCATTG
GCCGCGGAACTTTCTATGGTTAGAACTCGAGGGAAAGCAGCACAGCAAGTGAACGTTCCTGTTCCAGAAGGGTGTACTGATCCTCA
AGCCGAAAACTTTGATCCAACAGCTAGAAGTGACGATGGAACTTGTGTCTACAAGTTTTGAGTTTCCTCCTTGTTAAGTTGCTGTG
TTTCTAATGTTGTTTGTCTCTCTCTCTTTTTTTTTTTTTTTTGCCTTTTGTGTTACTGTGGATTGGTTCATGTCCTCTCTTTTTTT
TTGTGATCATGTGCAAACATTAATATTGTAAGATTGCATTGTCATAAACCATTTCTCAACTTTTTGTTTGCTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33718 unnamed protein product [Thellungiella halophila]21476e-239
XP_002881673 hypothetical protein ARALYDRAFT_482998 [Arabidopsis lyrata subsp. lyrata]21314e-237
NP_565913 ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis thaliana]21216e-236
NP_850320 ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis thaliana]21172e-235
NP_850321 ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis thaliana]21172e-235

Swiss-Prot top hits (Blast detail)Scoree value
P10896 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic21267e-238
Q7X999 Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic18972e-211
Q7X9A0 Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic18864e-210
Q40460 Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic18596e-207
Q40281 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic18596e-207

TrEMBL top hits (Blast detail)Scoree value
Q3EBJ5 Putative uncharacterized protein At2g39730.321171e-235
Q941B7 At2g39730/T5I7.321143e-235
Q8H172 At2g39730/T5I7.321081e-234
A5C3D4 Putative uncharacterized protein19092e-211
Q9AXG1 Ribulose-1,5-bisphosphate carboxylase/oxygenase activase 118859e-209

Arabidopsis top hits (Blast detail)Scoree value
AT2G39730.1 RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator21266e-239
AT2G39730.2 RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator21222e-238
AT2G39730.3 RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator21222e-238
AT1G73110.1 ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative8031e-085

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  4%
 
62  4%
 
1942  76%
 
185  9%
 
112  4%
 
71  2%
 
91  2%

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