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Information for unigene UN22913
| FASTA Sequence |
| Unigene ID: UN22913 | Length: 1017 |
| SNP | AGGTGTAAAGGAACATGATAATATAATCAGAAAAAAGCAAGTTAAAACAAAAGGATTTAAGTATTACAATAGTTTAAATTGTCCAT
TTCCTTTTGTCTCAACATGATAATGGTCTCCCAAACTACTAACTCGAAAGTACATAAAGAGTTTAGCTTTCTTCACCATCATCAGT
AATGAACTTTCCATTACCAGGATTAATGGCAGCAAAGAAGAAGAAAGCAACGTTTAAGAGGACGAGTGGTTCGATATCTTGAATTG
GAATACCAGTCTCAATGTTGAGTTGAGCCAATGCTCCTTTCCCGGTAATAATCTCCCCAATCAGTGAAAATGCTATTCCCAACTGT
GCCAACCTTCCTACGAACAACTCGTTCGCCTTCGTGAACCCAAACAATGGACCTTGTTCTTTGAGACCGAGGGCAGAGCGAACGCC
TTTGCCGGGAGGAATGACGGCTTTCTCGAGTCCGGTGGGAGGATCGTCGACGAATTTTCCTCTGTCTCCAAGAGCTCCAATGGCAC
CCAACAGAGTGAACAATATGAAGAAGAGAAGCAATGGCTCTGCTTCGTAAATCGGTATTCCTGTCTCCAAGTTCAGCTGTGCTAAT
ATCCCTTTCCCAGTCAACGCCTCACCTAGCAACGATGCGGCGAAACCGATCATAGCAACACGACCCACAAAGAGCTCGTTCTGCTT
CGTGAATCCTATCCCACCAGACGTTCCGAAGATACCGTCTTCAACCTTTGGCTTCACTTTCTCAACCTTTTTGGGAGCAGCTTTGG
TTTTGGGTTTGAAGATAGCGAGAGGAGCCAACGATGGTCTTCGAGATGGTAGAGTAACCGGTGAGTTTCCGGAGAGGAAGAGATGG
TGAACTTTGGGCTGAGCCAGAGGGTTCTTGTTCCTCAAGAAATGGTTAGCAGAGATGCCGGAAGTAAGCAGCATGGTTTGAGCCAT
TTTTTGTGTGTGTTGCAACAAGCTGCTTGTTGCGTCTGAGGATGAGAGAAAAGATCAGTCAAGTGTTGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_175092 photosystem II 22 kDa protein [Arabidopsis thaliana] | 1274 | 5e-138 |
| AAK95290 unknown protein [Arabidopsis thaliana] | 1269 | 2e-137 |
| XP_002891292 hypothetical protein ARALYDRAFT_891398 [Arabidopsis lyrata subsp. lyrata] | 1265 | 5e-137 |
| BAJ33694 unnamed protein product [Thellungiella halophila] | 1263 | 9e-137 |
| ABO41835 putative photosystem II protein [Gossypium raimondii] | 1002 | 2e-106 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9XF91 Photosystem II 22 kDa protein, chloroplastic | 1274 | 2e-139 |
| Q02060 Photosystem II 22 kDa protein, chloroplastic | 944 | 4e-101 |
| Q9SMB4 Photosystem II 22 kDa protein, chloroplastic | 935 | 4e-100 |
| P54773 Photosystem II 22 kDa protein, chloroplastic | 930 | 2e-099 |
| Q9FPP4 Photosystem II 22 kDa protein, chloroplastic | 919 | 3e-098 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q56XH2 Photosystem II chlorophyll-binding protein PsbS | 1274 | 3e-138 |
| Q94EI1 At1g44575/T18F15 | 1269 | 1e-137 |
| A4L9G7 Putative photosystem II protein | 1002 | 1e-106 |
| A4L9I5 Putative photosystem II protein | 1002 | 1e-106 |
| B9RJ42 Photosystem II 22 kDa protein, chloroplast, putative | 993 | 1e-105 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G44575.1 NPQ4 (NONPHOTOCHEMICAL QUENCHING); chlorophyll binding / xanthophyll binding | 1275 | 1e-140 |
| AT1G44575.2 NPQ4 (NONPHOTOCHEMICAL QUENCHING); chlorophyll binding / xanthophyll binding | 867 | 3e-093 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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