 |
Information for unigene UN22963
| FASTA Sequence |
| Unigene ID: UN22963 | Length: 1437 |
SSR | SNP | GGCCATCAGACCCTTTCTTTACCACATTTCACTCAGAGGCCACACAGTTTTAGTTTTAGAGAGAGAGAAACATCCCTCAAAGCTCT
CTCTCTCTCTCTCTCTTTCTCAGGCGATGGTTGTCGCTATGGACCAGCGTAGCAATGTGAACGGACATTCCAGTGAAGAAAGGTTT
GATCCGAGCGCACAACCACCGTTTAAGATCGGAGATATAAGAGCGGCCATTCCTAAGCATTGTTGGGTAAAGAGTCCTTTGAGATC
CATGAGCTACGTCGCGAGAGACATTTTCGCCGTCGTGGCTCTGGCCGTCGCCGCCGTGTATTTTGATAGCTGGTTCTTCTGGCCTC
TTTATTGGGCCGCCCAAGGAACCCTTTTCTGGGCTATCTTCGTACTCGGCCACGACTGTGGACATGGAAGCTTCTCAGACATTCCT
CTTCTGAATACTGCGGTTGGTCATATTCTCCATTCCTTCATCCTCGTTCCATACCATGGTTGGAGAATAAGCCATCGGACACACCA
CCAGAACCATGGCCATGTTGAAAACGACGAGTCTTGGGTTCCGTTGCCAGAAAAATTATACAAGAAATTGTCCCACAGTACACGGA
TGCTCAGATACACTGTCCCTCTCCCCATGCTCGCTTACCCTCTCTATCTGTGGTACAGAAGTCCTGGTAAAGAAGGGTCACATTAT
AACCCATACAGTAGTTTGTTTGCTCCAAGCGAGAGAAAGCTTATTGCAACTTCAACTACTTGCTGGTCGATCATGTTGGCCACTCT
TCTTTATCTATCATTCCTCGTTGGTCCAGTCACAGTTCTCAAAGTCTATGGTGTTCCTTACATCATCTTTGTGATGTGGTTGGACG
CTGTCACGTACTTGCATCATCATGGCCACGATGATAAGTTGCCTTGGTACAGAGGCAAGGAATGGAGTTATTTACGTGGAGGATTA
ACAACTGTTGATAGAGATTACGGGATCTTCAACAACATTCATCACGATATTGGAACTCACGTGATCCATCATCTTTTCCCACAAAT
CCCTCACTATCACTTGGTCGAAGCCACGAAAGCAGCTAAACATGTGTTGGGTAGATACTACAGAGAACCAAAGACGTCAGGAGCAA
TACCGATCCACTTGGTGGAAAGTTTGGTGGCAAGTATTAAGAAAGATCATTATGTCAGTGACACTGGTGATATTGTCTTCTACGAG
ACAGATCCAGATCTCTACGTTTATGCTTCTGACAAATCCAAAATCAATTAACCTTTCTTCCTAGCTCTATTTAGGAATAAAACAGT
ACTTTGTTCTCTACTTATTTCTTGTTGTTTTTAAGTTATAAATGTACTCATGAAACTTTTTTTTAATTAAATGTATTTACATTTCA
AATCGTAAAAGTTTTTGTTGGTTTTCTTTTATGTTTTCTAGTTACAATAAAGAAAGGTCTT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAA61775 omega-3 fatty acid desaturase [Brassica napus] | 2023 | 1e-224 |
| ADJ58020 fatty acid desaturase 3 [Brassica juncea] | 2015 | 9e-224 |
| ADK79069 microsomal omega-3 fatty acid desaturase [Brassica juncea] | 2004 | 2e-222 |
| ADJ58019 fatty acid desaturase 3-N1 [Brassica juncea] | 1996 | 1e-221 |
| P48624 RecName: Full=Omega-3 fatty acid desaturase, endoplasmic reticulum | 1988 | 1e-220 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P48624 Omega-3 fatty acid desaturase, endoplasmic reticulum | 1988 | 5e-222 |
| P48623 Omega-3 fatty acid desaturase, endoplasmic reticulum | 1941 | 1e-216 |
| P32291 Omega-3 fatty acid desaturase, endoplasmic reticulum | 1535 | 2e-169 |
| P48622 Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic | 1519 | 1e-167 |
| P48626 Omega-3 fatty acid desaturase, endoplasmic reticulum | 1504 | 7e-166 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C5J3Q9 Fatty acid desaturase 3 | 2023 | 7e-225 |
| Q6PKU4 Omega-3 fatty acid desaturase | 1982 | 4e-220 |
| B4X946 Omega-3 fatty acid desaturase | 1970 | 1e-218 |
| A1E435 Omega-3 fatty acid desaturase | 1955 | 6e-217 |
| Q93Y93 Omega-3 fatty acid desaturase (Fragment) | 1659 | 1e-182 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G29980.1 FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase | 1942 | 1e-217 |
| AT5G05580.1 FAD8 (FATTY ACID DESATURASE 8); omega-3 fatty acid desaturase | 1519 | 1e-168 |
| AT3G11170.1 FAD7 (FATTY ACID DESATURASE 7); omega-3 fatty acid desaturase | 1493 | 1e-165 |
| AT2G29980.2 FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase | 1344 | 2e-148 |
| AT3G12120.1 FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase/ omega-6 fatty acid desaturase | 602 | 2e-062 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
