 |
Information for unigene UN22979
| FASTA Sequence |
| Unigene ID: UN22979 | Length: 1073 |
| SNP | GGACTCTGCAAAGTTTAAACCTTAAGCAATGGCTCTCTCTTCGCTCTCTCCTCTGCCCATGAAGTCACTTGACACTACACGATCCT
CATCTCCCGTCTCCTCAAGGTCTCTTTACCATGTTCCGAGATACCCATTGAGGCGTCTACAGCTAATCTCCCGTTCAAAACCAGAA
CGAGATTCATCAAGTTCTAGGGAAGATTGTTGCTCCGGTAGAGAATCGAATACGTGGAAGAGGTTTTTATCTGGAGCATTAGCAGC
GGCTGTGATAGTCTCGAGCTCAGGGTTTCCAGCAATGGCAGATCTCAACAAGTTCGAGGCGGATATACGTGGCGAGTTTGGTATAG
GATCAGCTGCTCAGTTTGGTTCTGCTGATCTCAGCAAAACAGTTCACTCCAACGAAAATTTCAGAAGAGCCAACTTCACTTCTGCA
GATATGAGAGAGTCTGATTTTAGTGGTTCGACCTTCAACGGCGCCTATCTTGAGAAAGCAGTTGCATACAAAGCTAACTTCTCAGG
TGCTGATTTGAGTGATACATTGATGGATCGGATGGTGCTAAACGAGGCAAATCTGACAAATGCAATTCTTGTACGTTCGGTTCTAA
CCCGTAGTGACCTCGGTGGTGCCAAGATCGAAGGCGCTGACTTTAGTGACGCTGTGATTGATCTTCTTCAAAAACAGGCTCTGTGT
AAATACGCAAACGGGACAAACCCATTGACTGGAGTGAGCACAAGGAAGTCTCTTGGCTGTGGAAATAGCAGGAGAAATGCATATGG
CTCCCCTTCGTCTCCTTTACTCAGTGCACCACCTCAACGTCTTCTCGGTCGTGATGGATTCTGCGATGAGAAGACCGGTCTTTGTG
ACGCCTCGTAGTTTCAGTCCGTTAAGATCATGTGTGTGGTTACAATGCAGATGTAATAACATTTGTTTCATAATATGTTGTGTTAC
ATTAGTCGTGTATTGTATGTTTTATAGTAGTGAATTGTAAATGACCAGAAAGAGAGAAAATGGATGATACACTGAGTAAAGGAGAC
TATAATCACCTCTATGCAAGTGCAAATATATTTTGTTGAGG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002889925 hypothetical protein ARALYDRAFT_471375 [Arabidopsis lyrata subsp. lyrata] | 1243 | 2e-134 |
| NP_563902 Pentapeptide repeat-containing protein [Arabidopsis thaliana] | 1230 | 6e-133 |
| AAK59627 unknown protein [Arabidopsis thaliana] | 1224 | 3e-132 |
| XP_002532572 conserved hypothetical protein [Ricinus communis] | 1005 | 8e-107 |
| NP_001077523 Pentapeptide repeat-containing protein [Arabidopsis thaliana] | 994 | 1e-105 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8H1Q1 Thylakoid lumenal protein At1g12250, chloroplastic | 1230 | 3e-134 |
| O22160 Thylakoid lumenal 15 kDa protein 1, chloroplastic | 158 | 6e-010 |
| Q55837 Uncharacterized protein slr0516 | 133 | 5e-007 |
| Q52118 Uncharacterized protein in mobD 3'region | 131 | 8e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9T2V3 Putative uncharacterized protein | 1005 | 5e-107 |
| B6EUA5 Putative uncharacterized protein At1g12250.2 | 994 | 1e-105 |
| B4FH99 Putative uncharacterized protein | 957 | 2e-101 |
| Q6H667 Os02g0643500 protein | 942 | 1e-099 |
| A2X7Q5 Putative uncharacterized protein | 940 | 2e-099 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G12250.1 thylakoid lumenal protein-related | 1231 | 2e-135 |
| AT1G12250.2 thylakoid lumenal protein-related | 995 | 4e-108 |
| AT2G44920.2 thylakoid lumenal 15 kDa protein, chloroplast | 158 | 5e-011 |
| AT5G55000.2 FIP2; protein binding / voltage-gated potassium channel | 126 | 3e-007 |
| AT5G55000.1 FIP2; protein binding / voltage-gated potassium channel | 126 | 3e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
