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Information for unigene UN22994
| FASTA Sequence |
| Unigene ID: UN22994 | Length: 1037 |
| SNP | GGCTCTCTCGATCTCGGTTCTCGATCGACGACTGAACCGGAGACGAGACCGATTTAACCGCCGTGAAACTCAAAATCGAAATAAAT
CTCCGGCGATCCGATCGCGATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCGATCTTCAATTCCCCTTTGAATTGAGGAAGC
AGATCTCATGCTCTCTTTACTTGACCAACAAGACGGACAATCATGTGGCATTCAAGGTTAAGACAACGAATCCGAAAAAGTATTGC
GTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACTTGTGAAGTTCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGA
TATGCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTGTCACGCCCAAGGATGTCACTCCTGAGATGTTTA
GCAAAGAGGCTGGGCATTTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACCACCATCACCGGTTCACGAA
GGTTCAGAAGAGGGTTCTTCTCCACGGGCTTCTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACATATAGC
GGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCTCATCACAAAGCTAACCGAGGAAAAACAGTCTGCCCTTCAAC
TAAACAACAAACTTCAAAGAGAACTGGACCAGTTGAGACGTGACAGTAAGAGAGGCCAAAGTGGTATGCCTTTGATGTACGTTCTT
CTGGTCGGACTAATCGGTCTAATTCTGGGATACATTATGAAGAGCACATAACCACCTGAGTTCTACGTGCCACACAGGAAAAAGAA
CAAAGGAAACAGACTATTTCTTTTATTTTTGTATTTGAAAATTTCACCTGAAAGGTCTCTGATTGATTTGTAGTGAAAATGTCAAT
AACTCATTTTGCTTTGTTTTTATTTAAACTTTTTTATTTTACTTTTGGTACCAATAACATGGTCCGCTAAATCTGGATTTTATTTA
TTTAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_567101 vesicle associated protein [Arabidopsis thaliana] | 1069 | 3e-114 |
| AAM63134 putative VAMP-associated protein [Arabidopsis thaliana] | 1066 | 6e-114 |
| NP_182039 VAP-like protein 12 [Arabidopsis thaliana] | 967 | 2e-102 |
| XP_002880160 hypothetical protein ARALYDRAFT_483647 [Arabidopsis lyrata subsp. lyrata] | 967 | 2e-102 |
| XP_002511657 vesicle-associated membrane protein, putative [Ricinus communis] | 886 | 5e-093 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O60119 Vesicle-associated membrane protein-associated protein C16G5.05c | 195 | 3e-014 |
| Q9P0L0 Vesicle-associated membrane protein-associated protein A | 193 | 5e-014 |
| Q5R601 Vesicle-associated membrane protein-associated protein A | 193 | 5e-014 |
| Q9Z270 Vesicle-associated membrane protein-associated protein A | 189 | 1e-013 |
| Q9WV55 Vesicle-associated membrane protein-associated protein A | 188 | 2e-013 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8VZ95 At3g60600 | 1069 | 2e-114 |
| Q8LDM1 Putative VAMP-associated protein | 1066 | 4e-114 |
| Q9SHC8 At2g45140 | 967 | 1e-102 |
| B9RD68 Vesicle-associated membrane protein, putative | 886 | 3e-093 |
| B9GPC4 Predicted protein | 885 | 4e-093 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G60600.1 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 1070 | 9e-117 |
| AT2G45140.1 PVA12 (PLANT VAP HOMOLOG 12); structural molecule | 969 | 4e-105 |
| AT3G60600.2 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 813 | 5e-087 |
| AT3G60600.3 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 780 | 4e-083 |
| AT4G00170.1 vesicle-associated membrane family protein / VAMP family protein | 660 | 3e-069 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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