RadishBase

| | | |

Information for unigene UN23016

FASTA Sequence

Unigene ID: UN23016	Length: 4076		SNP
GCTATGAAGAGAAAATGGATTATGGGAGTGTGTGACTTGAACTATTGATCGGGCCGTGCAGAAATATGACTTTATCTGCTACATTG GAATTCACAACCAAATGTGTCTTTGTTCCAACCACTGTGTAAGCCCCATACAGGGGATAGGCTGGTTCACTTGAAGAGAATCTTTT CTATGATCATAATACCCGACGATGTCGTGGATGAGTGGGCTCCGTAAAATCCAAAAATCCAGGAGATTAAGGGATGGAACATAATA AATTAATAGTATGTAAATGCATTCATTTCCTCTGCATCGACTCGATTTATGATACTATCGGAGTGAATACAGGATCTAATGAAGAG TAGAGGGTAGACTTCATTAGTAACAAGTAAATCCTTTGTATTTTAAAAATCTCGATATAATTTTTGAGATTAAGGATTAATTGATA AGGTATGAGACGATCCAGAAAGCACTTAATCATGATCAACTTTTAAGCTTACGTGGGTGTTGAGCATTTACCTGTAAGAATGGAAT TTATGGTAATCTTTAGTTGCAATAACTTTGGAATCGGATAATTATTTTTTTACATATTAAATACTTGTGGATAACATATATCTTTT TTGTATGTATTAATTTAGTTTGGTTAATTCTTGCTCGAGCCGGATGATGAAAAATTATCATGTCCGGTTCCCTCGGGGGATGGATC CATAAGAATTCACCTATCCCAATAACAAAAAAACCAGATTTGAATGATCCTGTATTACGAGCTAAATTAGCTAAAGGTATGGGTCA TAATTATTACGGAGAACCCGCATGGCCCAATGATCTTTTATATATTTTTCCAGTAGTCATTCTTGGTACCATTGCCTGTAACGTAG GCTTAGCGGTTTTAGAACCATCAATGATTGGTGAACCTGCGGATCCTTTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTC TTTCCTGTATTTCAAATACTTCGTACAGTGCCTAACAAATTATTGGGTGTTCTTTTAATGGCTTCAGTACCGGCGGGATTATTAAC CGTACCCTTTTTGGAAAATGTTAATAAGTTCCAAAATCCATTTCGTCGTCCAGTGGCGACAACCGTCTTTTTGATTGGCACCGTGG TGGCCCTGTGGTTAGGTATTGGAGCAACATTACCAATTGATAAATCTCTAACTTTAGGTCTTTTTTAATTAAATTTATTCAATTGT AAAATAAAAGGCGTGGGTATCTAGGGAGTAGTCATTTCAAAATGAATTCTCCCTAGATACATATCTAAATTAATTTTATTTAAGTA AAATAGGTTTGACTGGAAAATCGAAATTACGTTGAAGGTTTAAAATCCATTTCAATTTTAAATTTACTTTTTAGTCAATTTTTTTT AATGCTTTTTTTATTTTTTTTCTAAAATGTCTAATATCTTTTTTACATCTTCTATGTGAAAATGTTCCATTTTGATAAGGTCTTCT TGACTGTTATTCAAAAGATCCAATAATGTATGTATATTGGACTTTTTGAGACAATTATAGATTCTGGGAGGCAATTCTAATTGGTC AATAAAAATATATTGAAATCCTAGTTCTTTTTTTTTTTTTCTTAGGTTAACTAATCTATTATGAAAAGGAAAAAGGGGTAAAGTAA CTTGATGTTGATTGTTCTCTAAATAGAACGTTTCTTCTTCTACATGTAGAAAAGGAATAAATAAATTAATCAAATTCCGGGAGGCT TCATGAAGTGCTTCTTTAGGAGTTAAACTTCCATTTGTCCATATTTCTAGAAAAAGAATCTCTTGTTTTTCATTCCCATTCCCATA AGAATGAATACTATGATTCGCATTTTGAACAGGCATGAATACAGCATCTATAGGATAACTTCGGTCTTCAAAGTTATTTGACATTT TTAGACTATATCCGCGATTCCTCTCGATTTTTAATCCAATACACAAATTTATTGGTTCCGTTAAGGTAGCTATATGCTGTGTATTA TCAACGATTTCCACAGAGGGCGGTAAAACTATGTCTCGAGCAGTTATATATCCGGGACCTTGGACACAAATAAGCGCGTTGCGCGT TCCATATAGATTACTTTTTAATACAATCTCGTTCAAATTCATTAAAATTTCATGTACTGATTCTTGAATACCGACTATGTTAGAAT AGTCATGTGGTATGTTCTCAAATTTTGCACGTGTAATACATGTTCCTTCTATTTCGCCAAGTAAAGCTCTTCGCATCGCAATGCCT ATTGTGTCGGCTTGACCTTTCATAAGTGGAGACAGAATAAAGCGTCCATAATAAAGACGCTTACTGTCTCTTCTTGATTCAACACA CTTCCACTGTAGTGTCCGAGTAGATACTTTGACTTTCTCTCGAACCATAGTAATTTTATTTGATCAGATCATTGAATCATTTATTT CTCTTGAAACCCTTTCAGCCTTTATTTAGTTCTATACACGTCGTTTTTTAGGGGGTCTACAACCATTATGTGGCATAGGGGTTACA TCTCGTACGAAACTTAAAAGTATACCGCTTCTACGAATAGCTCGTAATGCTGCATCTCTTCCCAGTCCAGGGCCTTTTATCCTTAC TTCAGCTCGTTGCATACCTTGATCCACTACCGCTCGAATAGCATTTCCTGCTGCGGTTTGAGCAGCAAAAGGTGTTCCTCTTCTTG TACCCCTGAATCCACAAGTACCCGCGGAGGACCAAGAAATTACCCGACCCCGTACATCTGTAACGGTCACAATGGTATTGTTGAAA CTTGCTTGAACATGAATAACTCCCTTTGGTATTCTACGTACATTTTTACGTGAACCACTACGGGTATTTTTACGTGAACCAATTCT TAATATAGGTTTTGCCATATTTTTTCATTTCACAAGAAATATATGGATATATCCATTTCATGTCAAAACGGACCTTTTTTTTTGAC TAGCTCCCTGGAAGTGCCTTTTCCTTTAGTAAGATTATCCTTGTCTTTGTTTATGCCTCGGGTTGGAACAAATTACTATAATTCGT CCCCTCCTACGGATTAGCCGACACTTTTCACAAATTTTACGAACGGAAGCCCTTATTTTCATAGTTGTTATTCCTTAATTCTCTTA ATATACTTATTCTTGGACGAAAAAAAGGTTTCTTGATATTTTTGAATCTTGAATTGTATCTTCGTGAAAGGAATGTTGAATTTCAA AAAACCACTGACTTATTTGAATCCTTGTTATGGAGTCTAGAAAGTGGCTGTTCCCCGATTAACTTAATACCTAAGAACTTACTAAA ATTTTTAACTTTTTCTCCTATAGGTATACCTATACAAAAATATGTCGAATCCTTTCAGAAGCATGACCTAAAATAAAAAAAATCTT TAGTATCTAAACAAAATCGAACCATGCCGTTCGGAAGTGATTCATAAAGAAAACTTTCATTAATTCATTTTTTCTTTAATTTCATT TGGGGTAAAACATTCTAAACTTTTTTAGCAGGGGTGGTATTACACAACCCCCCTTTTTTTTTTCACAAATGGTAAGTTCCGGATAT CCAATTTTGATATTAGAAGGATTACCATATATAACACAAAATTTCTCCGCCGATTCTTTTTAGTCGAGCTTCTCGATCTGTCATTA TACCTTGAGAAGTCGAAAGGATTACAATTCCTATTCCGCCTAAAATTCGTGGAATTCGTTGAGAGTTAGAATAGATTCGTAGACCC GGTCGGCTTATTCTCTTTAAATTTAAAATAGTTTTATAGGATTCTTTCTTATTTCGTCTATGTCTTAGGGTTAAAATCAAAAAATA TTGATTGTTTTCGCGATGTTTCCTTACGTTTTCGATAAAACCCTCTCGTAAAAGTATTTTAACAATGCTTTCGGTGATGTTAGTCG ATCCTATCCGAACTGTTCCTTTTCTATTCATGTCAGCATTTCGTATAGAGGTTATTATATCAGCAATAGTGTCTTTCCCCATGATA AGTTAAAATTCCTTAATTGTTCTATAATTTTGATATAATCAACATGTTATTTTTCTTTTATTTTTATAAAAATAGAGACGAATTAT ATATTAATATATGAATTCAATTATTAATATCCCT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ACY66281 RNA polymerase alpha subunit [Brassica napus]	1689	2e-185
YP_001123318 RNA polymerase alpha subunit [Barbarea verna]	1675	9e-184
YP_001123846 RNA polymerase alpha subunit [Nasturtium officinale]	1675	9e-184
YP_001123669 RNA polymerase alpha subunit [Lepidium virginicum]	1665	1e-182
YP_001123757 RNA polymerase alpha subunit [Lobularia maritima]	1657	1e-181

Swiss-Prot top hits (Blast detail)	Score	e value
A4QKD7 DNA-directed RNA polymerase subunit alpha	1675	3e-185
A4QLW5 DNA-directed RNA polymerase subunit alpha	1675	3e-185
A4QLD8 DNA-directed RNA polymerase subunit alpha	1665	5e-184
A4QLM6 DNA-directed RNA polymerase subunit alpha	1657	4e-183
A4QKM4 DNA-directed RNA polymerase subunit alpha	1656	5e-183

TrEMBL top hits (Blast detail)	Score	e value
D1L8S0 RNA polymerase alpha subunit	1689	1e-185
B1A967 RNA polymerase alpha chain	1511	6e-165
D3WEF8 RNA polymerase alpha subunit protein	1453	3e-158
D3WD99 RNA polymerase alpha subunit protein	1449	9e-158
B5AH30 RNA polymerase alpha subunit	1443	5e-157

Arabidopsis top hits (Blast detail)	Score	e value
ATCG00740.1 RNA polymerase alpha subunit	1634	2e-181
ATCG00730.1 A chloroplast gene encoding subunit IV of the cytochrome b6/f complex	815	2e-086
ATCG00750.1 30S chloroplast ribosomal protein S11	706	7e-074
ATCG00770.1 chloroplast 30S ribosomal protein S8	675	3e-070
ATCG00760.1 encodes a chloroplast ribosomal protein L36, a constituent of the large subunit of the ribosomal complex	194	2e-014

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	20			12%


10	20			12%


21	6			4%


11	22			13%


19	13			8%


6	16			10%


8	12			7%


12	21			13%


7	23			14%


20	5			3%


18	9			5%

Unigene Members	Member information