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Information for unigene UN23155

FASTA Sequence
Unigene ID: UN23155Length: 1815  SNP
GGTCAAAAGGGTTCCCACTCTTACTACAAATTCATAATTATTTAAGAGGTGTGGGATGATTCCTCCACATAGTCACAGACAGAACA
AGAATATCACTCCATTGTCATTGACAAAACACTTGGGTTTAACATAAGTGCGATATGGTTGAAACATTAAATAGTACTACAAAACA
AAGAAACAGTTCTTGTTTGCTGCTTCCCATTAATCTCAGGAGCTCTGTTTCGACCTCTTCATAAGCTCTATGAACTCTCTAAACGC
GTTGTCAGAGTCGTGAGGTCCAGGGGAGGCTTCAGGGTGGTACTGTAGAGACATGACATTCATAGCCGGGAAAGACAGACCCGCAC
AGCTTCCATCATTGAGATTGACATGTGTCACTTCTACCCCTCCTGGAAGTGAAGCCGGGTCAACCGCATAGTTGTGGTTCTGAGCA
CTGATCTCCACCTGGCCAGTTCTGTTATTACGAACTGGGTGGTTCCCTCCATGATGACCAAACTTCATCTTATAGGTTTTACCACC
CAAAGCTTGTCCGAGCAACTGATGGCCCATACAGATCCCGTAAACAGGAGCTTTACCAAGAAGCTCCTTGACCGTCTCAACAGCAT
ACGGAACAGCAGAAGGGTCTCCAGGACCGTTGCTGAACAAGATCCCGTCTGGATTCATTTTAAGAGCCTCGGAAGCTGGAAATGTC
GACGGGACAACGGTGATTTGGCATCCGTAAGAGGACAGGCGTCTTAGGATGTTATGCTTGATGCCAAAATCGTATGCTATAACTCT
GTAGGACTTCCCATCGCGTGTGTTGGTATTAAAATCCCATTCAGAGTCTGTTTTGTCGACCCACTCGTAGGGAGATTTGCAGGAGA
CATCACTTATTAGATCAATACTACGATATCCCAAGAACGGGACATTTGGAGAAGCTCATCGTCTGTTTTGGTTTGCTCTGTGCTTA
GCACACCGTTAAGACTACCTTCTTCTCTTAGTCGACGAGTTATTGCTCGAGTGTCAAGATCATAGATTCCCATGAGGTTCCTCTCG
GTTAGATAGTCAGCAAGTGTCTTCTTGCATCTCCAGTTCGAGGTACTGATGCTTAGACTTCTTATGACCAAACCAGCAAGGAAGCA
TTGCTCAGATTCTTCATCATCGAGATTGACACCGGTGTTACCAATTTGTGGGTTTGTCATAAGCACAAACTGTCCAGCATAACTAG
GATCAGTCAGAATCTCTTGATACCCTGTCAAGGAGGTGTTAAAGACCAATTCAGCAACACGGGTTCCAGGAGCACCAAAGGACTTA
GCAGGCCAGATGGAGCCGTCTTCCAACACAAGCCTAGCGTTATACGAACTCCACGGCTTCTCCACTATACCAGAGGCGGTGGATGA
AGTGAGAGGAGAAGCGGAGCATCGGACGAATGAAAACCTGAATCCACCGCGACGGGGAGATAAACCCGTCGGCAAAACAAAGCCAA
GAGGAGTCGTTGTAGCCGCCATGGTTGTTGTTTTCTCACTCTCACTGAGGTTTGGTCCCCCCGGCCGTAAGCAGTGGTATCAACGC
AGAGTCAAAGGCCAAGCTTGAAACGCTTGCGTAGAACAGTGTCCATCCCCAGATCTCACCTTTCAAACTGATATTAAAGAAGCTTC
CTCCAATGCAAAGAACGAAACCGAGAAACTCCAATAATAAGAAAAGGAAAGTTGGTCATCACATTTAATGTGTTTGGCACTCCCAT
GAAATTGCGCTTGTCAGCGAAGACATGATGACGGAAAGAATGAAGAGGAACTTTGGGAGTGATGAACAATAAGATTAGCCAACATA
TGAACAACG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002877070 hypothetical protein ARALYDRAFT_484564 [Arabidopsis lyrata subsp. lyrata]11602e-124
NP_566824 carbamoyl phosphate synthetase A [Arabidopsis thaliana]11592e-124
AAC25961 carbamoyl phosphate synthetase small subunit [Arabidopsis thaliana]11592e-124
NP_001078218 carbamoyl phosphate synthetase A [Arabidopsis thaliana]11592e-124
XP_002883110 carbamoyl phosphate synthetase small subunit [Arabidopsis lyrata subsp. lyrata]10642e-113

Swiss-Prot top hits (Blast detail)Scoree value
Q3A450 Carbamoyl-phosphate synthase small chain6599e-068
O66727 Carbamoyl-phosphate synthase small chain5585e-056
B2URJ0 Carbamoyl-phosphate synthase small chain5479e-055
Q1IWN0 Carbamoyl-phosphate synthase small chain5343e-053
Q4L5Q4 Carbamoyl-phosphate synthase small chain5343e-053

TrEMBL top hits (Blast detail)Scoree value
A8MRD8 Uncharacterized protein At3g27740.211592e-124
O24447 Carbamoyl phosphate synthetase small subunit11592e-124
Q9LVW7 Carbamoyl-phosphate synthetase small subunit11592e-124
D0VBC4 Anthranilate synthase 0210443e-111
B9GYM9 Predicted protein10077e-107

Arabidopsis top hits (Blast detail)Scoree value
AT3G27740.1 CARA (CARBAMOYL PHOSPHATE SYNTHETASE A); carbamoyl-phosphate synthase (glutamine-hydrolyzing)/ carbamoyl-phosphate synthase/ catalytic11606e-127
AT3G27740.2 CARA (CARBAMOYL PHOSPHATE SYNTHETASE A); carbamoyl-phosphate synthase (glutamine-hydrolyzing)/ carbamoyl-phosphate synthase/ catalytic11606e-127
AT5G11870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: SAG18 (SENESCENCE ASSOCIATED GENE 18) (TAIR:AT1G71190.1); Has 117 Blast hits to 115 proteins in 40 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).2521e-021
AT1G71190.1 SAG18 (SENESCENCE ASSOCIATED GENE 18)1444e-009

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
84  15%
 
118  30%
 
93  11%
 
72  7%
 
109  33%
 
121  4%

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