 |
Information for unigene UN23162
| FASTA Sequence |
| Unigene ID: UN23162 | Length: 1238 |
| SNP | GGACACAAACCAAATCTCGACAGAAAACTAAACAAAACCAAACAATGAAGCTTCACATGTTATGGCTCGTGTTGGTATTAATAGCT
GTCCAAGCGCACGCAACAAAGCAAAGAAAGAATGCTAAAATCCCTGCATTAATAGTTTTCGGAGATTCAATAATGGATACTGGTAA
CAACAACAATCTCTCTACTCTTCTTAAGTCCAACTTCCCTCCTTACGGCAAAGACTTTCCCGGTGGATTGGCTACTGGAAGATTTT
CTGATGGAAGAGTTCCTACTGATCTAATTGCGGAAAATTTGGGGTTGGCTAAGACAATACCAGCATACCTGAGCCCAAATTTGAAG
CCTAGAGATCTTTTGAAAGGTGTATCATTTGCATCTGGAGGAACTGGTTATGATCCATTGACAGCTCAAACTATGTCGGTGGTATC
AGTGTGGGATCAACTAATATATTTCAAAGAGTATATATCAACGATCAAGAAACATTATGGAAAAAGAAAAGCTCGGTACATTTTGG
ACCATAGCATTTTTCTCGTGGTTTCTAGTAGCAATGACCTTGCTCACACTTATATATCCCAATCTTATAAATATAACTCTACATCG
TATGCTACTTTCTTGGCCAAATCAGCAGTTAAATTCGTAAGAGAATTACACAAGCTTGGAGCTCGAAAAATTGGGGTGTTTAGTGC
ACTTCCTGTTGGATGTGTACCACTTCAAAGATCAGTGCGTGGAAGTGTATTAACAAGAGAATGTGTTAAACCCTTAAACAATATGG
CAAAACAATTCAACGCTAGACTTTCTCCAGCACTGAGATCTTTGAATAGAAAGTTGGATGGTATTATCCTCTATGTTGATGTTTAT
GAGACTTTTCTTGACATGATCCAAAAGCCTAAAAAATACGGTTTCGAGGTAGCTGATAGAGCTTGTTGCGGTACTGGTTTTCTCGA
AATTTCTTATATGTGCAACTCATTTAATCCATTCACATGCTCTAATTCGTCGGCCTATATATTTTGGGATAGCTACCATCCAACTG
AAAGAGCTTATCAAGTTATGGTTGATAAGTTACTCAGCAAATACTTAAGCAAACTCTTTTGATGTTAAACATTACTTACTTCTTTG
CGTTTCATTGTATTTATCCTTCTTATTGTTTTATGTATGTGATTAATTCATTATTGAATGTTCAACGTCTTGTGCACTGGAATAAT
TTGGATATAATCTTAAGGTTCCATGTTTGCAACC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002888210 hypothetical protein ARALYDRAFT_475383 [Arabidopsis lyrata subsp. lyrata] | 1459 | 2e-159 |
| XP_002886683 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1455 | 6e-159 |
| AEM36355 At1g59406 [Arabidopsis thaliana] | 1442 | 2e-157 |
| NP_564741 GDSL esterase/lipase [Arabidopsis thaliana] | 1432 | 3e-156 |
| NP_001154437 lipase/hydrolase [Arabidopsis thaliana] | 1355 | 3e-147 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q3ECM4 GDSL esterase/lipase At1g58725 | 1432 | 1e-157 |
| Q93W97 GDSL esterase/lipase At1g59030/At1g59406 | 1432 | 1e-157 |
| Q9C653 GDSL esterase/lipase At1g58480 | 1355 | 1e-148 |
| Q3EAQ9 GDSL esterase/lipase At3g43550 | 1169 | 4e-127 |
| Q9FHW9 GDSL esterase/lipase At5g42170 | 1092 | 3e-118 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B5BRD9 Carboxylic ester hydrolase | 1324 | 7e-144 |
| B5BRD0 GDSL-motif lipase | 1289 | 8e-140 |
| B5BRE1 Carboxylic ester hydrolase (Fragment) | 998 | 4e-106 |
| B9GQR7 Predicted protein | 948 | 3e-100 |
| B9R8D0 Zinc finger protein, putative | 945 | 6e-100 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G59406.1 GDSL-motif lipase, putative | 1433 | 9e-159 |
| AT1G58520.3 hydrolase, acting on ester bonds / lipase | 1360 | 3e-150 |
| AT1G59030.1 carboxylesterase/ hydrolase, acting on ester bonds / lipase | 1324 | 4e-146 |
| AT3G43550.1 carboxylesterase/ hydrolase, acting on ester bonds / lipase | 1169 | 4e-128 |
| AT1G58520.2 hydrolase, acting on ester bonds / lipase | 1152 | 3e-126 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
