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Information for unigene UN23253
| FASTA Sequence |
| Unigene ID: UN23253 | Length: 1024 |
| SNP | GAGTCTTCAGGTAAAACACCAACACAGTTGGGAAAAAGAGGTTCGATTTCTGATGAATCATACAAAGATACGACAAAGGAAATTGC
ACAATTTTACATAGGAAAGATCACAAACAAACTCTTTCTCTGGCTCTCACTCACATTACAATAAGATTCAACTCGCTCACTTTCCG
GGGACGAAGTTGGTAGCGAAGGCCCATGCGTTGTTGTTGACTGGGTCAGCCAAATGGTCGGCAAGATTCTCCAACGGTCCCTTTCC
GGTGACAATAGCCTGAACAAAGAATCCAAACATAGAGAACATAGCCAACCTTCCGTTCTTGATCTCCTTCACCTTCAACTCGGCGA
AAGCCTCTGGGTCCGTAGCGAGGCCCAATGGGTCGAAGCTGCCTCCTGGGTAAAGCAAGTCCTCTGCCTCTCCCAACGGTCCCTCT
CCGGCAACTCTGTAACCCTCAACAGCTCCCATGAGGATCACCTGAGTAGCCCAAATGGCTAAGATGCTCTGAGCGTGGACAAGGCT
CGGGTTGCCCAAGTAGTCGAGTCCTCCTTCGCTGAAGATCTGTGAACCGGCCTTGAACCAAACGGCTTCTCCGAACTTGACTCCGT
TACGAGCCAAGAGCTCAGGGAAAACACAGCCTAGGGCTCCGAGCATGGCCCATCTGCAGTGGATAACTTCTAGCTCACGGTTCCTG
GCGAAGGTCTCGGGGTCGGCTGATAGACCGGCGGTGTCCCATCCGTAGTCTCCGGGGAACTCTCCGGTAAGGTAGCTCGGGGGCTC
GCCGGAGAATGGACCCAAGTACTTAACCCTGTCGGATCCGTACCATGGGGAGCCTGATGGACCGGTGGGTTTGACGGTTTTGCGCA
TGGTGACACGGCCGGTTCCAAAGACTTCGGAGGCTCCTGGTGAGAGCTTCACGGCCTTTCCGGCGAAGGCAGGGGAGGACAGAGCC
ATGGTTGAAGCAGCCATTTGAACGTTTCTTCTTTTTTGTTGATTTTATGTTTTTTTTTTGTGACTGGGTGAGAGTCCC
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| GenBank top hits (Blast detail) | Score | e value |
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| P13851 RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic; AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags: Precursor | 1407 | 2e-153 |
| AAL67432 chlorophyll a/b binding protein [Brassica oleracea] | 1402 | 7e-153 |
| NP_565787 light-harvesting complex II chlorophyll a/b binding protein 1 [Arabidopsis thaliana] | 1361 | 4e-148 |
| ABG29728 chloroplast chlorophyll a/b binding protein [Brassica napus] | 1359 | 7e-148 |
| AAM64379 putative photosystem II type I chlorophyll a b binding protein [Arabidopsis thaliana] | 1357 | 1e-147 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P13851 Chlorophyll a-b binding protein 1, chloroplastic | 1407 | 8e-155 |
| P04778 Chlorophyll a-b binding protein 1, chloroplastic | 1343 | 2e-147 |
| P04777 Chlorophyll a-b binding protein 2/3, chloroplastic | 1338 | 8e-147 |
| P07370 Chlorophyll a-b binding protein 1B, chloroplastic | 1271 | 5e-139 |
| P27495 Chlorophyll a-b binding protein 40, chloroplastic | 1259 | 1e-137 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8W159 Chlorophyll a/b binding protein | 1402 | 5e-153 |
| Q39142 Photosystem II type I chlorophyll a /b binding protein | 1361 | 3e-148 |
| Q153I7 Chloroplast chlorophyll a/b binding protein | 1359 | 5e-148 |
| Q8LCZ4 Putative photosystem II type I chlorophyll a b binding protein | 1357 | 8e-148 |
| Q7Y1A1 Chlorophyll a/b binding protein | 1338 | 1e-145 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT2G34430.1 LHB1B1; chlorophyll binding | 1362 | 1e-150 |
| AT1G29930.1 CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding | 1344 | 1e-148 |
| AT1G29910.1 CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding | 1339 | 5e-148 |
| AT1G29920.1 CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2); chlorophyll binding | 1339 | 5e-148 |
| AT2G34420.1 LHB1B2; chlorophyll binding | 1324 | 3e-146 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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