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Information for unigene UN23353

FASTA Sequence
Unigene ID: UN23353Length: 1327 SSRSNP
ATCGATTTAAAGATAGTATTTGTCATTACTCTGTTTACACCAAACCGAGCCTAAAACCACTCATTTGCAAATGATAAAACAAGCAT
CACTAAAATCCGAGTGACCTTAAACACTGATTCTGCTTAAAACTTTACAAGTTGAATACCTAAGAAACAGCTGAAAGGTTGTGAAT
ATACAATTCCCATATAAAGGCAGTCCTATAAACCGAAAAGGCTTCAAAGACACGTCACAAATATGATATCAATGGATCTTTTTTTC
ATGAACAGATCAAAGTCAATGCAATCCCCAATCTTTTTTTTCCATGTCAAGCAGAGACCATCACTGTTTTTTCTTTCCCGTCGCCT
TGGAGATTGTTTTGATCAATCCTTTGGTGATTTTCCAGAACCAAAGAAGATTCATCGCCGACAGGACCGGTCCAACCGCAATAAGG
CTGTAAAACCCCAGTGGAAACACTTGCTTCACCTGGTGGAAATGGGAGTACATGTGTACAAAGAAGTAGATAAACAAAAGGATCCT
CGCGACCAGCCAACCCAAGAACAGGGCAATCCCATTGAGTGTGTAAGCCTTAGAGCCTTTTTGACCACTAGCATCCAAGTACCACC
GTAGGTTGACAAACGGGGTAGTGGCCTCAGACAAGAGAACCATGAATATGTAGAACTGCGCTTGTCCACTTGTGACAGAAAGAATG
ATGGAGAACATCGATAAGCAGTGATGGAAAACATATTCAACACCACCAAGAGTAGGAAAATGCCAAAAGATCATCATTAAGTCTGC
TACAAAATAGCCTAAGGAGATCCCCATTACAGATTCCGACAACCTCGTTGTACTATTGATGACCGAATCACCATGAACACTCTCAT
CAAACTGATCTGAAATCACCAGGAGATAGATTGATGCCACAGAAACAAAAACAGCATGGAACGTTGAGAATCCCCTGTTGTTCCAT
TCCATTCTAACTTTGCCGTCGAGTTTCCCATAAGCACTGAAGAGCAAAGGACTTATGAAACCAGTCAAGTCATAAACGATTTTGCA
CATGAGGATGCCGGAACAAACAGATGCAAGCAAGACGAGTTGCTTTGAAGAGTCATCGAAATTGGTCGTCATGAATGAAAGATTCT
TGCTTTGAGCCGAGGGAAGGAGGGAGGAATCTTTTTCTTGCGGTCAATTACAATCCTTTAGATGTCGAAATCGTCAAAGTTGCAAG
CTTTTCTCTCTCTCTCTTTATCTTTCTATGGAAGGATCGAAATTAATCACTCGCACCCGCCAGCCAATTCGCGTCGTTGGTAAGTA
ATTATACTATTTTGGTTTTCCTTCCTTATTAAATTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_567355 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]11814e-127
AAM61723 unknown [Arabidopsis thaliana]11762e-126
XP_002872510 hypothetical protein ARALYDRAFT_911336 [Arabidopsis lyrata subsp. lyrata]11734e-126
BAJ33804 unnamed protein product [Thellungiella halophila]9208e-097
XP_002526388 conserved hypothetical protein [Ricinus communis]8633e-090

Swiss-Prot top hits (Blast detail)Scoree value
Q8CGF5 Transmembrane protein 562951e-025
Q96MV1 Transmembrane protein 562771e-023
Q6PGS5 Transmembrane protein 56-B2681e-022
Q6GLX2 Transmembrane protein 56-A2511e-020
Q6P4N1 Transmembrane protein 562448e-020

TrEMBL top hits (Blast detail)Scoree value
Q93ZA9 AT4G10360 protein11813e-127
Q8LEX4 Putative uncharacterized protein11761e-126
Q9SV86 Putative uncharacterized protein AT4g103609644e-102
B9SK69 Putative uncharacterized protein8632e-090
B9IQX6 Predicted protein8596e-090

Arabidopsis top hits (Blast detail)Scoree value
AT4G10360.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 453 Blast hits to 451 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 97; Plants - 91; Viruses - 3; Other Eukaryotes - 37 (source: NCBI BLink).11821e-129
AT4G10360.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 453 Blast hits to 451 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 97; Plants - 91; Viruses - 3; Other Eukaryotes - 37 (source: NCBI BLink).11821e-129
AT1G31300.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19645.2); Has 478 Blast hits to 478 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).6542e-068
AT1G31300.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19645.2); Has 478 Blast hits to 478 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).6542e-068
AT4G19645.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 401 Blast hits to 401 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 102; Plants - 84; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).6327e-066

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
118  28%
 
102  7%
 
125  17%
 
96  21%
 
181  3%
 
84  14%
 
63  10%

Unigene MembersMember information