Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN23370

FASTA Sequence
Unigene ID: UN23370Length: 1998  SNP
GGAGATTCAAAACCCCCAAATCTCAGATTCCGATCTCACCACCGACGATATGAAGGTCGTAGACAAGATCAAATCCGCGACGGAGC
AAGGCCAAACCGCCTTCTCCTTCGAGTTCTTCCCTCCCAAGACCGATGACGGCGTCGAGAATCTCTTCGAGCGGATGGATCGTCTG
GTCTCCTACGGCCCCTCCTTCTGCGACATCACCTGGGGAGCGGGCGGATCCACCGCTGATCTCACGCTCGAGATCGCCTCGAGGAT
GCAGAACGCGATCTGCGTGGAGACGATGATGCACCTCACCTGCACCAACATGCCCGTGGAGAAGATCGACCACGCGCTCGAGACGA
TCAGATCCAACGGGATCCAGAACGTGCTCGCGCTGAGAGGGGATCCGCCTCATGGACAGGATAAGTTCGTTCAGGTGGAAGGAGGT
TTCGCTTGTGCGTTGGATCTGGTGAATCATATTAGGAGCAAGTATGGTGATTACTTTGGGATCACTGTTGCTGGCTATCCTGAGGC
TCATCCGGATGTGATTGAAGCTAATGGACTTGCTACTCCAGAGTCTTATCAGAGTGATCTTGCTTACCTGAAGAGAAAGGTTGATG
CTGGAGCGGATTTGATTGTGACGCAGCTGTTCTATGATACTGATATATTCCTCAAGTTTGTGAATGACTGTCGGCAAATTGGGATT
AACTGTCCCATTGTTCCTGGGATTATGCCCATTTCTAACTACAAGGGCTTCTTGCGTATGGCTGGTTTCTGCAAGACCAAGATACC
TGCTGAGCTCACTGCTGCCTTGGAGCCTATCAAGGACAATGAAGAAGCTGTGAAAGCTTTTGGTATTCACTTTGCAACCGAGATGT
GCAAAAAGATTTTGGCCCATGGAATCACTACCCTTCATATCTACACTTTGAACGTGGACAAATCAGCTATTGGAATACTAATGAAT
CTTGGTCTGATTGATGAGTCTAAAATCACTCGTTCTTTACCTTGGAGACGCCCTGCAAATGTTTTCCGTACTAAGGAAGATGTTCG
CCCCATTTTCTGGGCAAACCGTCCAAAGAGCTACATATCTAGGACTAAGGGCTGGAATGACTTCCCACAGGGACGATGGGGTGATT
CACGCAGTGCATCATATGGCACACTTTCGGATTATCAGTTCATGCGCCCACGAGCACGTGACAAGAAGCTCCAGCAAGAATGGGCT
GTCCCACTGAAAGGCATTGAAGATGTTCAAGAGAAATTCAAAGAGCTCTGTCTTGGAAACTTAAAAAGCAGTCCATGGTCTGAGTT
AGATGGACTCCAGCCAGAAACAAAGATCATAAACGAGAAACTCGGAAAAATAAACTCCAACGGCTTCCTGACCATCAATAGCCAAC
CATCAGTCAATGCAGCCAAATCTGATTCCCCAGCTATTGGATGGGGTGGTCCTGGTGGTTATGTCTACCAGAAAGCTTACCTAGAG
TTCTTCTGCTCTAAGGATAAGTTAGACACACTTGTGGAGAAGTCCAAAGCTTTTCCTTCCATCACCTTCATGGCGGTGAACAAAGC
AGAGAACTGGGTATCAAACATTGGTGAATCCGATGTGAATGCAGTTACCTGGGGAGTGTTCCCAGCTAAGGAGGTTATTCAACCGA
CAATTGTGGATCCAGCCAGTTTCAAAGTCTGGAAAGACGAAGCCTTTGAGATTTGGTCAAGAAGCTGGGCTAACTTGTACCCTGAG
GATGACCCTTCTAGAAAGCTGCTCGAAGAGGTGAAGAACAGCTACTATTTGGTAAGCTTAGTGGACAACGATTACATCAGTGGTGA
TATATTCTCAGTCTTTGCCTGATCTCTGAGAAACCCCAATGGGGGAAATGAGGAAACCATTCGATTTTCACGATTTGTTGTAACTT
TTCTAAAGATATTTGTGATGTATCAACAATACTCATCAGTTTCATTGTGGCTTGTTCTTTTATCTATGTCGAAACAAATAAATTAA
GAAATGCTGGCGTTGCTTAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_191556 methylenetetrahydrofolate reductase 1 [Arabidopsis thaliana]30290.0
XP_002876531 MTHFR1 [Arabidopsis lyrata subsp. lyrata]30290.0
XP_002880088 MTHFR2 [Arabidopsis lyrata subsp. lyrata]28020.0
NP_566011 methylenetetrahydrofolate reductase 2 [Arabidopsis thaliana]27960.0
CAB53783 methylenetetrahydrofolate reductase [Arabidopsis thaliana]27883e-313

Swiss-Prot top hits (Blast detail)Scoree value
Q9SE60 Methylenetetrahydrofolate reductase 130290.0
O80585 Methylenetetrahydrofolate reductase 227960.0
Q75HE6 Probable methylenetetrahydrofolate reductase25462e-286
Q9SE94 Methylenetetrahydrofolate reductase 125452e-286
P42898 Methylenetetrahydrofolate reductase13014e-142

TrEMBL top hits (Blast detail)Scoree value
A5ATB7 Methylenetetrahydrofolate reductase26412e-296
B9HG95 Methylenetetrahydrofolate reductase26377e-296
B9N8L0 Methylenetetrahydrofolate reductase26332e-295
B9STA4 Methylenetetrahydrofolate reductase26162e-293
C5WVY7 Methylenetetrahydrofolate reductase25732e-288

Arabidopsis top hits (Blast detail)Scoree value
AT3G59970.3 MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1); methylenetetrahydrofolate reductase (NADPH)30300.0
AT2G44160.1 MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2); methylenetetrahydrofolate reductase (NADPH)27960.0
AT3G59970.2 MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1); methylenetetrahydrofolate reductase (NADPH)20182e-226
AT3G59970.1 MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1); methylenetetrahydrofolate reductase (NADPH)20164e-226

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
125  17%
 
67  24%
 
83  10%
 
97  24%
 
113  10%
 
72  7%
 
102  7%

Unigene MembersMember information