RadishBase

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Information for unigene UN23428

FASTA Sequence

Unigene ID: UN23428	Length: 672		SNP
GCCCTAGCAGGCCGTATCCAACTTTATTTAACCTTAAACAAGTCTTAAACATATAAGCTTCATCTTCAAATCAACAAGATATTATC ACACACAGATAATGGTTTTAATTATGCATCAGGAATCTTCAGAAACCATAGAATTTTCTTTGTCAAAAAAGAAAAAAAACCATAGG ATTTTTTTTTAAAATCAAGACGAAAGTCACAAAGTACATAATAGATTCATAACGAGAGAAACACAAGAAGCAACAAGAACAAAGTC TTATGCTAAGTTATTGAAACTTAGATGGAATTATTGCAGTGGAGCTTTTGGTGAATCATATTATATTCATCAAGTTGAAGCAGCAG AAGCCTCAGCTTCCAGAAGTTGCTTCACCTTGGTGATGTAGTCACTCATAGCCTCATCCGTCGATTTTGCTTCAACGGCCTTCCAA GCATCCCACTTGGCTCTTTCCTTCATGCTGAACATTCCAGGACGGCTGGTGTCCACTGGCCCGACGGTGGCTTGCTTGAAGAGACC GTAGAGGATGAGCAAGTCAGCGTCAGATGGTTTCGTGGTGAGCTTCTTGACTTTCTCAGCGTGCTCCTCGAAGTCCTCCTTCAAAC CCATGATGATGAGAAGTTGAGATAAGCAGTGAAAACAAAATCAATATGTGACCCAGAAGACGAGAACGCG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
Q39315 RecName: Full=Acyl-CoA-binding protein; Short=ACBP	423	1e-039
NP_174462 acyl-CoA-binding protein 6 [Arabidopsis thaliana]	383	5e-035
AAM65863 Acyl CoA binding protein, putative [Arabidopsis thaliana]	383	5e-035
XP_002893688 acyl-CoA-binding protein [Arabidopsis lyrata subsp. lyrata]	365	6e-033
Q39779 RecName: Full=Acyl-CoA-binding protein; Short=ACBP	354	1e-031

Swiss-Prot top hits (Blast detail)	Score	e value
Q39315 Acyl-CoA-binding protein	423	5e-041
P57752 Acyl-CoA-binding domain-containing protein 6	383	2e-036
Q39779 Acyl-CoA-binding protein	354	5e-033
O04066 Acyl-CoA-binding protein	350	1e-032
O22643 Acyl-CoA-binding protein	323	2e-029

TrEMBL top hits (Blast detail)	Score	e value
C6T1E0 Putative uncharacterized protein	354	7e-032
Q6UA08 Acyl-CoA-binding protein	353	1e-031
Q9SMG5 Acyl-CoA binding protein (ACBP)	344	1e-030
C6SXV7 Putative uncharacterized protein	343	1e-030
D6BR55 Acyl-CoA-binding protein (Fragment)	342	2e-030

Arabidopsis top hits (Blast detail)	Score	e value
AT1G31812.1 ACBP6 (acyl-CoA-binding protein 6); acyl-CoA binding / phosphatidylcholine binding	384	2e-037
AT5G53470.1 ACBP1 (ACYL-COA BINDING PROTEIN 1); acyl-CoA binding / lead ion binding	139	4e-009
AT4G27780.1 ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2); acyl-CoA binding / lead ion binding	128	8e-008
AT3G05420.1 ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding	117	1e-006
AT3G05420.2 ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding	117	1e-006

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	9			18%


9	10			20%


7	6			12%


11	10			20%


6	4			8%


19	3			6%


12	5			10%


20	1			2%


10	1			2%


21	1			2%

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