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Information for unigene UN23510
| FASTA Sequence |
| Unigene ID: UN23510 | Length: 1188 |
SSR | SNP | AGAGAGGATCAAGATCATAACTTCAGATTCAATTTTCTTTCTACCTCAAATAGAGTAAAACAGAATCATTTAAAAAAAAATTCTCT
AGCCTTTTATTATTATGTACACTGTTTCCTGAACCATAACAGATTCAAGTTCTTTCACTGTTTTCTCTCAAGAACCCTTATACATG
CAAACCATCTGTAGGGAGAGAAGTAAGATCAGTTTTGGTTCTGAGACAGACACACAAGTCTACTCAGCAAAAGAGTGTTCATTCAA
TTGCTCCGTTGGAAGCGGATCAACTTTCTCAGCCTTGCCATCTTTCTTAGGGATTATCAGACCGTACCCTCCTTCTTTTCTCTTGT
ACACTATATTTATCTCACCGGTTTCTTCATTCTGGAAGCCGTAGAAATCATGAGCTACTAACTCCAGCTGCTCCACTGCCTCAGAG
ACGGTCAATGGTGGCATCTCAAAGTACTTGGTACGCACAATCTCCTTGATCAAATCATCCTCTTCTTCTTCTCCAGCAACGTCCTC
AGGATCCTCCACAACGGGCTCAATCACTGGCTCTCTCACCTTCGACCTGTTGAAACCTTTCATGTGCCTTCCATGGTCAGAGTCCT
TCTCCTTGATCTTCCTCAGCTTCCTCTGTATTATCGTTGAAACCAAGTCGATACAAGCGTATACCGTCTCAGCATCTTCCTCACCG
CGCACAACACCATGCTTCTTTGTAAACAGTGTTACCTCGCATCTACGGATCTTGGGTCCTTTACCAAACTCTCCACCTCGAACAGA
GAGTCTCACATCAACTTCTCTGACGAGATGACTGTGCTTCTGAACAGCTTTTCCTACTTTGTCCTCAACATGCTGCTTGATTGCCT
CTGATAACTCGAGGTTTTTGCCTTGGATGATCAGCTTGACGGAAGCGAGAGAACCGTCCCACGACATTTTCACTGTTGATGAGCTT
CTACGACCAGTCGAGGGTAGGCGATCATGGTGAGTGATACGGCCTAGGAAGCCTGACCGGAGAGTCTTGGAATCAGAGCGTCTCCC
CACCATTGAGACAACCGTGGAGGAAGATGGGCATGTTGGAGAAGTGATAGAGACGTTGCAGTGGGGTAACTTGGTATGAGAGAACC
CTAAGAGTGTCGTCATTTGATTTGATTTGAGAGAGAGAGAGATTCAGAGATTGTTTGTGAAGTGAAGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAB11201 unnamed protein product [Arabidopsis thaliana] | 1290 | 8e-140 |
| NP_568447 putative 30S ribosomal protein [Arabidopsis thaliana] | 1277 | 3e-138 |
| XP_002872116 hypothetical protein ARALYDRAFT_489312 [Arabidopsis lyrata subsp. lyrata] | 1275 | 5e-138 |
| XP_002524427 Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative [Ricinus communis] | 960 | 2e-101 |
| ABK95986 unknown [Populus trichocarpa] | 948 | 4e-100 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P19954 30S ribosomal protein 1, chloroplastic | 861 | 2e-091 |
| P47908 Light repressed protein A | 348 | 6e-032 |
| Q9RVE7 Protein DR_1082 | 239 | 3e-019 |
| Q49VV1 Uncharacterized protein SSP1964 | 237 | 5e-019 |
| Q4L4H7 Uncharacterized protein SH2139 | 220 | 4e-017 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FLV3 Similarity to ribosomal protein 30S subunit | 1290 | 6e-140 |
| Q94K97 Putative uncharacterized protein At5g24490 | 1277 | 2e-138 |
| B9SEK8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative | 960 | 1e-101 |
| B9I297 Predicted protein | 950 | 2e-100 |
| A9PHY3 Putative uncharacterized protein | 948 | 3e-100 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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