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Information for unigene UN25149
FASTA Sequence |
Unigene ID: UN25149 | Length: 1248 |
SSR | | GGCTCTTTTGGGGACCCCGTCGCGCCCCTCGTGAAAAAGATATTATTATTATTATTTTTCTCTTCTTTGTATACCCGTTTTCGATT
TAGGGTACCCAATCTCTGCGATCAAAATCTCGGCTTTTTGCCGCACCATAAATCTTGTTCCGATTCTCCAATCCATTCCTTCGATT
CATCTCCACTGTTCACGAATCCAGCAGTGCTATCCTCCCCCTTCTCCTTTTGTACTGATTTAAAGATGGCAGCTAAAGCTAATAAT
CTTCCCGACAGTGAGGTTGTGCCATCAGCTGTTCGGGAGGTTACATCGATTCTTCGCGCGGCTCATGATATACATCCCACCCATCC
TCGGATTGCTTACCTATGTGTGTGTGGTGCCGCTGAGGAGTGTTTAAGCGCTGACCCCTTCCTACGTGGGAACGGTGTTCTCTTGT
TTGCGTTTCGTCTTAAACGCTGGACTGAAACCAATGATGAAACACTTGGGGATGGAAAATTGCGGCCTAGTGATGTACGTGACATC
CAGAGTTTCTATCTAGAATATTACCAGAAAAATATCCATGCTTTGTTCAAGTTTATCGAAGACTACAGACATTTTGAAGGATGGGG
CCCAGCGCCCATGCCTCTCTGGCCTACTCCTATGGACGGTTTCAAAGCTCTTAGAACTCTCAGTGTCAGGGCTGACAGGGCTGAAC
TTCTCACATATGCATGTGGAATTGCTCTTCCTCTCTACAAAGTCGTGGAGCATCTTTCTAAAGATGAGCAACTGCCTCCTGAGATT
TTGGAAGCCCACAATGAAGTGAAACGGCTAGCCGAAATCTTTAGGCCATACATGATTTATCCCAGCGATCCTTATAGTGATGATCA
TTTTATTTGGAGAATTCCTCAGATCAGGGCTGTCAAAAACGCACTTCGTGGAAAATTCTACCCTAGTAGTAATACTCAAGGCGATA
ACAATTCCGAAAACACAGAGATTATTGGCAATAATCCTGCGGACACGCCTGTGGGGATTAATTGGAGACCGATGATAGAGATAATT
AGTCTTCTATTGATTAGCTTTTTTGTGATATGTTTGTTTCAACTACTAATGTTTTAACTTTTTTTAATAGATTATGTGGAATCATC
ATAATTTCGATCGTTGATTTAAGTTTTTTGCATGTTTTTTGGATTGAGTTAATCTACTCCATGTCACATTAGTCAAAATTGTTTTG
ATTATCTTTTAATAATCGAAATAAGATAATTTGTGTTTTAACTT
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GenBank top hits (Blast detail) | Score | e value |
CAN72923 hypothetical protein VITISV_026987 [Vitis vinifera] | 204 | 8e-014 |
XP_002283298 PREDICTED: similar to Callose synthase 3 [Vitis vinifera] | 204 | 8e-014 |
CBI16456 unnamed protein product [Vitis vinifera] | 204 | 8e-014 |
BAD62105 putative callose synthase 1 catalytic subunit [Oryza sativa Japonica Group] | 202 | 1e-013 |
EEC81348 hypothetical protein OsI_24536 [Oryza sativa Indica Group] | 202 | 1e-013 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q9LXT9 Callose synthase 3 | 193 | 6e-014 |
Q9AUE0 Callose synthase 1 | 191 | 1e-013 |
Q9SL03 Callose synthase 2 | 191 | 1e-013 |
Q9SHJ3 Callose synthase 7 | 157 | 9e-010 |
Q3B724 Callose synthase 5 | 156 | 1e-009 |
TrEMBL top hits (Blast detail) | Score | e value |
A5C0X0 Putative uncharacterized protein (Fragment) | 204 | 5e-014 |
B8B2Y5 Putative uncharacterized protein | 202 | 9e-014 |
B9FR03 Putative uncharacterized protein | 202 | 9e-014 |
Q5Z5B8 Putative callose synthase 1 catalytic subunit | 202 | 9e-014 |
B8A395 Putative uncharacterized protein | 201 | 1e-013 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT2G30680.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATGSL03 (GLUCAN SYNTHASE-LIKE 3); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT2G31960.1); Has 38 Blast hits to 38 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 227 | 6e-019 |
AT5G13000.1 ATGSL12 (glucan synthase-like 12); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups | 193 | 5e-015 |
AT5G13000.2 ATGSL12 (glucan synthase-like 12); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups | 193 | 5e-015 |
AT1G05570.1 CALS1 (CALLOSE SYNTHASE 1); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups | 191 | 9e-015 |
AT2G31960.1 ATGSL03 (GLUCAN SYNTHASE-LIKE 3); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups | 191 | 9e-015 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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