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Information for unigene UN25210
| FASTA Sequence |
| Unigene ID: UN25210 | Length: 1205 |
SSR | | GGACCCACTCTCAACCCTATCTCTTCCTCCATGGCTGCTTCAGCTTCGTCCCTCGCTCTCTCCACCTTCAACCCTAAATCCCTTCC
TTTCTCCATCTCCAAACCCGCCTCCACTCCCTTCCTCCCTCCTTCCCTCTCCTTCAAACTCAACTACCAATCCATTTCCCTCTCCG
CTTCCTCCGCAGCCGCGTCTCGCTTCGTCCGCAACGTTGCCGTCACAGATGACATCAACGTAGAAGAAGAAGAAGACAGCCTTTTC
TCCGATGACGCTCCGCAGCAGGAGCAATCCTTCTCTGCTGACCTCAAACTCTTCGTCGGTAACCTCCCTTTCGACGTCGACAGTGC
TCAGCTCGCTCAGCTCTTCGAGAGCGCCGGAAATGTCGAGATGGTTGAGGTAATCTATGACAAAGTGACAGGACGAAGCAGGGGTT
TTGGGTTCGTGACTATGTCTTCAGTGTCTGAAGTTGAGGCAGCTGCCCAACAGTTTAATGGCTATGAGTTAGATGGTAGAGCCTTG
AGAGTTAATGCGGGTCCTCCTCCACCGAAGAGGGAAGACTCCTTCTCCAGAGGACCCAGAGGCAGCTTTGGAAGCTCTGGATATGG
TGGTGGTGGAGGAGGTGGTTCTGGTTCAGGAAACCGTGTTTACGTCGGCAACCTATCTTGGGGAGTCGATGACATGGCTCTCGAGA
GTTTGTTCGGGGAGCAGGGAAAAGTAGCTGAGGCTAGAGTCATCTACGACAGGGACAGTGGTCGATCTAAGGGTTTTGGGTTTGTG
ACATACAACTCTGCTCAAGAGGTCCAAAATGCCATCAGGAACTTGAATGGTGCCGATTTGGACGGTAGACAAATCAGAGTCTCCGA
AGCTGAGGCTAGGCCTCCAAGGCGCCAGTTTTGATCACCACCCTTCCTATTCTCATTAAACGCACTTTCTGGAGGGCGCTTCGAAG
AATATAGAGTTATGTGAGAGGATGGCTGTTTTGGACCGTACTAAGCTCTTCACCTATGTTTGTTATGCAATGGATGCACGAGTGGT
CTTTTTATTAGAAACGTATTAAGTAAAGGTTATGAGTGAAGAACATGTTCTCGACTGTCTGTGTTCTGCCATTGACTACTTAGCTT
TGGTTTGATTCGGGTTTCTCTCTATTTTGTGGTCTCTTCATAATGAATGCTTCTCTGTTTAACAGTCTAATTTAAGTCTTTTTCAC
C
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002881497 hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp. lyrata] | 1216 | 3e-131 |
| AAM66970 putative RNA-binding protein [Arabidopsis thaliana] | 1200 | 2e-129 |
| NP_181259 ribonucleoprotein [Arabidopsis thaliana] | 1196 | 7e-129 |
| XP_002281642 PREDICTED: hypothetical protein [Vitis vinifera] | 853 | 4e-089 |
| XP_002519525 ribonucleoprotein, chloroplast, putative [Ricinus communis] | 852 | 5e-089 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic | 1196 | 3e-130 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 810 | 2e-085 |
| P49314 31 kDa ribonucleoprotein, chloroplastic | 754 | 5e-079 |
| Q08937 29 kDa ribonucleoprotein B, chloroplastic | 752 | 9e-079 |
| Q43349 29 kDa ribonucleoprotein, chloroplastic | 562 | 1e-056 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L941 Putative RNA-binding protein | 1200 | 2e-129 |
| Q7GA50 Putative RNA-binding protein | 1196 | 5e-129 |
| B9S0K6 Ribonucleoprotein, chloroplast, putative | 868 | 5e-091 |
| Q8W214 Single-stranded DNA binding protein | 824 | 6e-086 |
| B9MTC6 Predicted protein | 809 | 3e-084 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 1197 | 2e-131 |
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 562 | 8e-058 |
| AT3G53460.2 CP29; RNA binding / poly(U) binding | 562 | 8e-058 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 272 | 4e-024 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 263 | 4e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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