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Information for unigene UN25847

FASTA Sequence
Unigene ID: UN25847Length: 1048 SSR 
GGATGTATAAACCTCTGTGGCTGCCGGTCATTTATCTCTCTCTCTCCCTTCCTCTAAGCTAAAGCCAAAACATAACAAGAATAAAA
GCTATGGCTGGTATGCTTCCAGGAGTTGAGTGCGCGAGGAGGCGGCGCTTCCACGGCGGTGCTCCACCGATTGACTTATCCAACAC
GGCTTCTGTGGCTGCAGCAACGGGACACGTATGGACTCGCCGACCATCCTTCTCTCTCTACACTACCAATCACGAGAGTCACCAAG
CCTATGTCTCCTTCTCGGAGAGAAATATTAGGAACAAATCTTACGGTGTTGATAACCATGAGAAGCTTGTAGGAGCAGCCAAAGAG
GCGAAAGATAGATTGGACGAGCGGCTGAGAAACCCGCGAAGAAGGTTTGGTTTGTTTAAACAAGTGTATGATAGCAAACCAAGTCC
TAATTCACCTTAAAATCCACTGAACCAGCTCAAGCATTTTGCTTTAATTCCATGATAATGACGCATGCTGATGTACTATTATCTTT
CTAACATGTGGTATCACATGAGCATATAATTGTGAGATTGCCTTTTGTCGGACAATTATTTTATCCTTTTAGCGACTTTTTCTGGG
ATAGGCGTATTTTAGCAAGGGCTTTCACTTTAATGTTAAGATTACCAAATTTGACATTTACTTGTCCGAATTTTGCTTTGAATTTT
TAAGTTCAGGCAAAATGACAAAGACAAAGTGAATAAATTGGAGCAAGGGAAAGGTAAATCTTTCAAGGATTTACCGACAGAGGTAG
TTGGGTTAAAGAAGAGCCGGAGAAGGCTTGTCAAATGGTTCGGGTGGCGAGTAAAGGAGCAACAAGAGTGTGCTATATGTCTAGAC
CAGTTCAAGACGGGTGAGACATTGGTCCACCTACCATGCACCCATAAGTTTCACTCCATATGTTTATTGCCTTGGCTAGATACCAA
CGTGTATTGCCCTTATTGTAGAATGGACATTTGGAATTAATTGTAATAATTTAATGTCATATCATTAGGTCTTGTTTACGGCTAAT
CTTAGAGCATCTCTAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002883903 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]4555e-043
NP_565376 RING/U-box domain-containing protein [Arabidopsis thaliana]4492e-042
NP_001189531 RING/U-box domain-containing protein [Arabidopsis thaliana]4449e-042
XP_002266080 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]2583e-020
XP_002532496 conserved hypothetical protein [Ricinus communis]2549e-020

Swiss-Prot top hits (Blast detail)Scoree value
Q6GPV5 E3 ubiquitin-protein ligase RNF1811461e-008
Q5M974 E3 ubiquitin-protein ligase RNF1811452e-008
Q6AXU4 E3 ubiquitin-protein ligase RNF1811442e-008
Q9CY62 E3 ubiquitin-protein ligase RNF1811433e-008
Q9P0P0 E3 ubiquitin-protein ligase RNF1811407e-008

TrEMBL top hits (Blast detail)Scoree value
Q9ZQF5 AT2G15580 protein4492e-042
B9T2M7 Putative uncharacterized protein2546e-020
C6T4S3 Putative uncharacterized protein2546e-020
A5ASH9 Putative uncharacterized protein2474e-019
B9IMK4 Predicted protein2457e-019

Arabidopsis top hits (Blast detail)Scoree value
AT2G15580.1 zinc finger (C3HC4-type RING finger) family protein4507e-045
AT1G55530.1 zinc finger (C3HC4-type RING finger) family protein1641e-011
AT3G19950.1 zinc finger (C3HC4-type RING finger) family protein1551e-010
AT1G49850.1 zinc finger (C3HC4-type RING finger) family protein1532e-010
AT4G26400.2 zinc finger (C3HC4-type RING finger) family protein1522e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  22%
 
112  22%
 
62  22%
 
122  22%
 
211  11%

Unigene MembersMember information