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Information for unigene UN61936

FASTA Sequence
Unigene ID: UN61936Length: 741 SSR 
GGAAGAAGGAGAAGCAGCTTTTGTGAGTAGCTTGAGCACAAAAGAAGAAGAAGAAGAAACTGTTTCAGAGAAGGCGGCGGTCAACA
ACGGTAAGAGTTCAACAAGCTGCGGTTTTGGGTTGGAGGATTGCGTGAAGATTATACGACAGCTCGAGTGTTCAGGTCACGTTGAG
AAGAGTTTCAGACAGGAGTTTCTGACTTGAATCAGTTAAAGCCAAAGGCAGTATCTACTGTAAGAACTTGGCCTGCCAAGCTATAC
TGAGACAAGAAGACTTGTTTTGTCAAAGGTGTTCTTGCTGTATCTGCCATAAGTATGGTGCCAATAAAGATCCTACTCTCTGGTTA
ACCTGCCATTCTGATGATCCCGGTGAATCTTGTGGCTTGTCTTGCCATCTGGATTGTGCTTTCAAGGATGAGGAATCAGGTCTCAA
GAAAGATAAGCCAAGTCACGATCTTGATGGATGCTTCCACTGCGTCTCTTGTGGCAAAACAAACAGCTTGCTTGAATGTTGGAAGA
AGCAACTGTTGATCGCAAAGGAAACCAGAAGCGTAGACGTGCTTTGTTACCGTCTTGTATTGGCTCAGAAGCTTCTCAAGGGAACT
GAGAAGTACAGAAAACTATCTGAGACCGTGGAGGAAGCTGTGAAGAGTTTATAAACTGAGCTGTGTGGTCCTCTCACTGATCTCCC
ATCGGCAATGTGTAGAGGAAACGTAAACAGCTTGGCTCAGCGACAAAGTGAAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002867362 hypothetical protein ARALYDRAFT_491730 [Arabidopsis lyrata subsp. lyrata]6246e-063
NP_194749 vernalization5/VIN3-like protein [Arabidopsis thaliana]6174e-062
NP_849471 vernalization5/VIN3-like protein [Arabidopsis thaliana]6174e-062
NP_974639 vernalization5/VIN3-like protein [Arabidopsis thaliana]6174e-062
NP_001190871 vernalization5/VIN3-like protein [Arabidopsis thaliana]6174e-062

Swiss-Prot top hits (Blast detail)Scoree value
Q9FIE3 Protein VERNALIZATION INSENSITIVE 34792e-047

TrEMBL top hits (Blast detail)Scoree value
Q3E9U4 Putative uncharacterized protein At4g30200.36173e-062
Q8GUH6 At4g302006173e-062
Q9SUM4 Nuclear coiled-coil protein AT4g302006173e-062
A1DW35 VIN3-like 3 protein6022e-060
Q5BPT4 Putative uncharacterized protein6022e-060

Arabidopsis top hits (Blast detail)Scoree value
AT4G30200.1 Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.6172e-064
AT4G30200.3 Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.6172e-064
AT4G30200.2 Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.6172e-064
AT2G18880.1 VEL2 ((VERNALIZATION5/VIN3-LIKE))6021e-062
AT5G57380.1 VIN3 (VERNALIZATION INSENSITIVE 3); protein binding / zinc ion binding4792e-048

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  100%

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