BLASTN 2.12.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input: /tmp/rose_8053460250116).
1 sequences; 60 total letters
Query= RU00008
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
yueji_00178 108 2e-28
> yueji_00178
Length=60
Score = 108 bits (56), Expect = 2e-28
Identities = 60/61 (98%), Gaps = 1/61 (2%)
Strand=Plus/Minus
Query 1105 CTAACGTTGCCGTCAACCACCACGTTCCCGGTTTCTAGGTAATTTTTAACCCCGTATTTT 1164
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Sbjct 60 CTAACGTTGCCGTCAACCACCACGTTCCCGGTTTCTAGGTAATTTTTAACCC-GTATTTT 2
Query 1165 C 1165
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Sbjct 1 C 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 59313
Database: User specified sequence set (Input: /tmp/rose_8053460250116).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
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