BLASTN 2.12.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input: /tmp/rose_8415629515397).
1 sequences; 60 total letters
Query= RU19091
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
yueji_01011 115 4e-31
> yueji_01011
Length=60
Score = 115 bits (60), Expect = 4e-31
Identities = 60/60 (100%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 9 CGGTGCCTCTGAATCTGAGGTCAGGAAGGCTTTTAGACAGCTTGCCTTACAATATCATAA 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CGGTGCCTCTGAATCTGAGGTCAGGAAGGCTTTTAGACAGCTTGCCTTACAATATCATAA 1
Score = 89.0 bits (46), Expect = 5e-23
Identities = 56/60 (93%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 125 ATGATACTGCAAGGCAAGCTGTCTAAAAGCCTTCCTGAAACCTCAGATTCAGAGGCACCG 184
|||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3 ATGATATTGTAAGGCAAGCTGTCTAAAAGCCTTCCTG--ACCTCAGATTCAGAGGCACCG 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 30940
Database: User specified sequence set (Input: /tmp/rose_8415629515397).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
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