BLASTN 2.9.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_1249786134316).
1 sequences; 60 total letters
Query= RU00915
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
yueji_01122 92.8 4e-24
> yueji_01122
Length=60
Score = 92.8 bits (48), Expect = 4e-24
Identities = 60/63 (95%), Gaps = 3/63 (5%)
Strand=Plus/Minus
Query 194 AAAGGTACTCCCCAAAACGTACCCAACTGGCAGCTACAACATTGCTCAAATAACCTATGA 253
|||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAAGGT-CTCCCCAAAA-GT-CCCAACTGGCAGCTACAACATTGCTCAAATAACCTATGA 4
Query 254 GCT 256
|||
Sbjct 3 GCT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 31720
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_1249786134316).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
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