BLASTN 2.9.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_2865368245142).
1 sequences; 60 total letters
Query= RU03641
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
yueji_01761 73.6 2e-18
> yueji_01761
Length=60
Score = 73.6 bits (38), Expect = 2e-18
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 554 ATGATAACAAGAACTGGAATAGGCGCAATCCGAGCGAGTAGTAG 597
||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1 ATGATAACAAGAACTGGAATAGGCGCAATCCGAGCTAGTGGTAG 44
Score = 54.4 bits (28), Expect = 1e-12
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 600 AGCTAGTGGTAGTAGTACTGCATAAGTA 627
||||||||||||||||||||||||||||
Sbjct 33 AGCTAGTGGTAGTAGTACTGCATAAGTA 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 35088
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_2865368245142).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
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