BLASTN 2.12.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input: /tmp/rose_6403541249196).
1 sequences; 60 total letters
Query= RU00002
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
yueji_02069 98.5 8e-26
> yueji_02069
Length=60
Score = 98.5 bits (51), Expect = 8e-26
Identities = 59/61 (97%), Gaps = 2/61 (3%)
Strand=Plus/Minus
Query 283 CGTTCAACAGTCGACTCAGAA-CTGGTTACGGACTAAGGGGTAATTCCGTACTTGTTTTT 341
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 60 CGTTCAACAGTCGACTCAGAAACTGG-TACGGACTAAGGGGTAATTCCGTACTTGTTTTT 2
Query 342 A 342
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Sbjct 1 A 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 36771
Database: User specified sequence set (Input: /tmp/rose_6403541249196).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
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