BLASTN 2.9.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_3235949432450).
1 sequences; 60 total letters
Query= RU05081
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
yueji_02243 108 2e-28
> yueji_02243
Length=60
Score = 108 bits (56), Expect = 2e-28
Identities = 60/61 (98%), Gaps = 1/61 (2%)
Strand=Plus/Plus
Query 962 CTGGCGTTTTGTATGGTCTAGAGGTTTCTTGATTTTTTCATTGAAATCTACTCCTTATAG 1021
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 CTGGCGTTTTGTATGGTCTAGAGGTTTCTTGA-TTTTTCATTGAAATCTACTCCTTATAG 59
Query 1022 A 1022
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Sbjct 60 A 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 55641
Database: User specified sequence set (Input:
/var/www/html/bioinfo/tmp/rose_3235949432450).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
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