BLASTN 2.12.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: User specified sequence set (Input: /tmp/rose_1542771950803).
1 sequences; 60 total letters
Query= RU58008
Length=216
Score E
Sequences producing significant alignments: (Bits) Value
yueji_02515 115 2e-31
> yueji_02515
Length=60
Score = 115 bits (60), Expect = 2e-31
Identities = 60/60 (100%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 87 ACAGTTCTCAGCCTCAAGGTTCAGGTAGAGCTGGTTTGTGACATTGATGCTTGTAAGGAT 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ACAGTTCTCAGCCTCAAGGTTCAGGTAGAGCTGGTTTGTGACATTGATGCTTGTAAGGAT 1
Score = 77.4 bits (40), Expect = 5e-20
Identities = 40/40 (100%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 177 TCCTTACAAGCATCAATGTCACAAACCAGCTCTACCTGAA 216
||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TCCTTACAAGCATCAATGTCACAAACCAGCTCTACCTGAA 41
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.620 1.10
Effective search space used: 11077
Database: User specified sequence set (Input: /tmp/rose_1542771950803).
Posted date: Unknown
Number of letters in database: 60
Number of sequences in database: 1
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 2, Extension: 2
|